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OR2A1 (olfactory receptor family 2 subfamily A member 1)

Identity

Alias_namesolfactory receptor, family 2, subfamily A, member 1
Other alias-
HGNC (Hugo) OR2A1
LocusID (NCBI) 346528
Atlas_Id 71228
Location 7q35  [Link to chromosome band 7q35]
Location_base_pair Starts at 144231911 and ends at 144232843 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2A1   8229
Cards
Entrez_Gene (NCBI)OR2A1  346528  olfactory receptor family 2 subfamily A member 1
Aliases
GeneCards (Weizmann)OR2A1
Ensembl hg19 (Hinxton)ENSG00000221970 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221970 [Gene_View]  chr7:144231911-144232843 [Contig_View]  OR2A1 [Vega]
ICGC DataPortalENSG00000221970
TCGA cBioPortalOR2A1
AceView (NCBI)OR2A1
Genatlas (Paris)OR2A1
WikiGenes346528
SOURCE (Princeton)OR2A1
Genetics Home Reference (NIH)OR2A1
Genomic and cartography
GoldenPath hg38 (UCSC)OR2A1  -     chr7:144231911-144232843 -  7q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2A1  -     7q35   [Description]    (hg19-Feb_2009)
EnsemblOR2A1 - 7q35 [CytoView hg19]  OR2A1 - 7q35 [CytoView hg38]
Mapping of homologs : NCBIOR2A1 [Mapview hg19]  OR2A1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005287
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR2A1
Cluster EST : UnigeneHs.528398 [ NCBI ]
CGAP (NCI)Hs.528398
Alternative Splicing GalleryENSG00000221970
Gene ExpressionOR2A1 [ NCBI-GEO ]   OR2A1 [ EBI - ARRAY_EXPRESS ]   OR2A1 [ SEEK ]   OR2A1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)346528
GTEX Portal (Tissue expression)OR2A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGT9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGT9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGT9
Splice isoforms : SwissVarQ8NGT9
PhosPhoSitePlusQ8NGT9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2A1
DMDM Disease mutations346528
Blocks (Seattle)OR2A1
SuperfamilyQ8NGT9
Human Protein AtlasENSG00000221970
Peptide AtlasQ8NGT9
HPRD14928
IPIIPI00414176   IPI00867566   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGT9
IntAct (EBI)Q8NGT9
FunCoupENSG00000221970
BioGRIDOR2A1
STRING (EMBL)OR2A1
ZODIACOR2A1
Ontologies - Pathways
QuickGOQ8NGT9
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2A1
Atlas of Cancer Signalling NetworkOR2A1
Wikipedia pathwaysOR2A1
Orthology - Evolution
OrthoDB346528
GeneTree (enSembl)ENSG00000221970
Phylogenetic Trees/Animal Genes : TreeFamOR2A1
HOVERGENQ8NGT9
HOGENOMQ8NGT9
Homologs : HomoloGeneOR2A1
Homology/Alignments : Family Browser (UCSC)OR2A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2A1
dbVarOR2A1
ClinVarOR2A1
1000_GenomesOR2A1 
Exome Variant ServerOR2A1
ExAC (Exome Aggregation Consortium)OR2A1 (select the gene name)
Genetic variants : HAPMAP346528
Genomic Variants (DGV)OR2A1 [DGVbeta]
DECIPHEROR2A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2A1 
Mutations
ICGC Data PortalOR2A1 
TCGA Data PortalOR2A1 
Broad Tumor PortalOR2A1
OASIS PortalOR2A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2A1
DgiDB (Drug Gene Interaction Database)OR2A1
DoCM (Curated mutations)OR2A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2A1 (select a term)
intoGenOR2A1
Cancer3DOR2A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR2A1
Genetic Testing Registry OR2A1
NextProtQ8NGT9 [Medical]
TSGene346528
GENETestsOR2A1
Target ValidationOR2A1
Huge Navigator OR2A1 [HugePedia]
snp3D : Map Gene to Disease346528
BioCentury BCIQOR2A1
ClinGenOR2A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD346528
Chemical/Pharm GKB GenePA32101
Clinical trialOR2A1
Miscellaneous
canSAR (ICR)OR2A1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2A1
EVEXOR2A1
GoPubMedOR2A1
iHOPOR2A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:54 CEST 2017

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