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OR2A1 (olfactory receptor family 2 subfamily A member 1)

Identity

Alias (NCBI)-
HGNC (Hugo) OR2A1
HGNC Previous nameolfactory receptor, family 2, subfamily A, member 1
LocusID (NCBI) 346528
Atlas_Id 71228
Location 7q35  [Link to chromosome band 7q35]
Location_base_pair Starts at 144231911 and ends at 144232843 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)OR2A1   8229
Cards
Entrez_Gene (NCBI)OR2A1    olfactory receptor family 2 subfamily A member 1
Aliases
GeneCards (Weizmann)OR2A1
Ensembl hg19 (Hinxton)ENSG00000221970 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221970 [Gene_View]  ENSG00000221970 [Sequence]  chr7:144231911-144232843 [Contig_View]  OR2A1 [Vega]
ICGC DataPortalENSG00000221970
TCGA cBioPortalOR2A1
AceView (NCBI)OR2A1
Genatlas (Paris)OR2A1
SOURCE (Princeton)OR2A1
Genetics Home Reference (NIH)OR2A1
Genomic and cartography
GoldenPath hg38 (UCSC)OR2A1  -     chr7:144231911-144232843 -  7q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2A1  -     7q35   [Description]    (hg19-Feb_2009)
GoldenPathOR2A1 - 7q35 [CytoView hg19]  OR2A1 - 7q35 [CytoView hg38]
ImmunoBaseENSG00000221970
Genome Data Viewer NCBIOR2A1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005287
Consensus coding sequences : CCDS (NCBI)OR2A1
Gene ExpressionOR2A1 [ NCBI-GEO ]   OR2A1 [ EBI - ARRAY_EXPRESS ]   OR2A1 [ SEEK ]   OR2A1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2A1 [ Firebrowse - Broad ]
GenevisibleExpression of OR2A1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)346528
GTEX Portal (Tissue expression)OR2A1
Human Protein AtlasENSG00000221970-OR2A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGT9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGT9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGT9
PhosPhoSitePlusQ8NGT9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR2A1
SuperfamilyQ8NGT9
AlphaFold pdb e-kbQ8NGT9   
Human Protein Atlas [tissue]ENSG00000221970-OR2A1 [tissue]
HPRD14928
Protein Interaction databases
DIP (DOE-UCLA)Q8NGT9
IntAct (EBI)Q8NGT9
BioGRIDOR2A1
STRING (EMBL)OR2A1
ZODIACOR2A1
Ontologies - Pathways
QuickGOQ8NGT9
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR2A1
Atlas of Cancer Signalling NetworkOR2A1
Wikipedia pathwaysOR2A1
Orthology - Evolution
OrthoDB346528
GeneTree (enSembl)ENSG00000221970
Phylogenetic Trees/Animal Genes : TreeFamOR2A1
Homologs : HomoloGeneOR2A1
Homology/Alignments : Family Browser (UCSC)OR2A1
Gene fusions - Rearrangements
Fusion : QuiverOR2A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2A1
dbVarOR2A1
ClinVarOR2A1
MonarchOR2A1
1000_GenomesOR2A1 
Exome Variant ServerOR2A1
GNOMAD BrowserENSG00000221970
Varsome BrowserOR2A1
ACMGOR2A1 variants
VarityQ8NGT9
Genomic Variants (DGV)OR2A1 [DGVbeta]
DECIPHEROR2A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2A1 
Mutations
ICGC Data PortalOR2A1 
TCGA Data PortalOR2A1 
Broad Tumor PortalOR2A1
OASIS PortalOR2A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2A1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOR2A1
Mutations and Diseases : HGMDOR2A1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaOR2A1
DgiDB (Drug Gene Interaction Database)OR2A1
DoCM (Curated mutations)OR2A1
CIViC (Clinical Interpretations of Variants in Cancer)OR2A1
Cancer3DOR2A1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR2A1
MedgenOR2A1
Genetic Testing Registry OR2A1
NextProtQ8NGT9 [Medical]
GENETestsOR2A1
Target ValidationOR2A1
Huge Navigator OR2A1 [HugePedia]
ClinGenOR2A1
Clinical trials, drugs, therapy
MyCancerGenomeOR2A1
Protein Interactions : CTDOR2A1
Pharm GKB GenePA32101
PharosQ8NGT9
Clinical trialOR2A1
Miscellaneous
canSAR (ICR)OR2A1
HarmonizomeOR2A1
DataMed IndexOR2A1
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXOR2A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:13:59 CEST 2021

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