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OR2A12 (olfactory receptor family 2 subfamily A member 12)

Identity

Alias_namesOR2A12P
olfactory receptor, family 2, subfamily A, member 12 pseudogene
olfactory receptor, family 2, subfamily A, member 12
Other aliasOR2A16P
HGNC (Hugo) OR2A12
LocusID (NCBI) 346525
Atlas_Id 71229
Location 7q35  [Link to chromosome band 7q35]
Location_base_pair Starts at 144095108 and ends at 144096040 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2A12   15082
Cards
Entrez_Gene (NCBI)OR2A12  346525  olfactory receptor family 2 subfamily A member 12
AliasesOR2A12P; OR2A16P
GeneCards (Weizmann)OR2A12
Ensembl hg19 (Hinxton)ENSG00000221858 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221858 [Gene_View]  chr7:144095108-144096040 [Contig_View]  OR2A12 [Vega]
ICGC DataPortalENSG00000221858
TCGA cBioPortalOR2A12
AceView (NCBI)OR2A12
Genatlas (Paris)OR2A12
WikiGenes346525
SOURCE (Princeton)OR2A12
Genetics Home Reference (NIH)OR2A12
Genomic and cartography
GoldenPath hg38 (UCSC)OR2A12  -     chr7:144095108-144096040 +  7q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2A12  -     7q35   [Description]    (hg19-Feb_2009)
EnsemblOR2A12 - 7q35 [CytoView hg19]  OR2A12 - 7q35 [CytoView hg38]
Mapping of homologs : NCBIOR2A12 [Mapview hg19]  OR2A12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136902 BC136903
RefSeq transcript (Entrez)NM_001004135
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR2A12
Cluster EST : UnigeneHs.553708 [ NCBI ]
CGAP (NCI)Hs.553708
Alternative Splicing GalleryENSG00000221858
Gene ExpressionOR2A12 [ NCBI-GEO ]   OR2A12 [ EBI - ARRAY_EXPRESS ]   OR2A12 [ SEEK ]   OR2A12 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2A12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)346525
GTEX Portal (Tissue expression)OR2A12
Human Protein AtlasENSG00000221858-OR2A12 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGT7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGT7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGT7
Splice isoforms : SwissVarQ8NGT7
PhosPhoSitePlusQ8NGT7
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2A12
DMDM Disease mutations346525
Blocks (Seattle)OR2A12
SuperfamilyQ8NGT7
Human Protein Atlas [tissue]ENSG00000221858-OR2A12 [tissue]
Peptide AtlasQ8NGT7
HPRD14929
IPIIPI00303646   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGT7
IntAct (EBI)Q8NGT7
FunCoupENSG00000221858
BioGRIDOR2A12
STRING (EMBL)OR2A12
ZODIACOR2A12
Ontologies - Pathways
QuickGOQ8NGT7
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2A12
Atlas of Cancer Signalling NetworkOR2A12
Wikipedia pathwaysOR2A12
Orthology - Evolution
OrthoDB346525
GeneTree (enSembl)ENSG00000221858
Phylogenetic Trees/Animal Genes : TreeFamOR2A12
HOVERGENQ8NGT7
HOGENOMQ8NGT7
Homologs : HomoloGeneOR2A12
Homology/Alignments : Family Browser (UCSC)OR2A12
Gene fusions - Rearrangements
Fusion: Tumor Portal OR2A12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2A12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2A12
dbVarOR2A12
ClinVarOR2A12
1000_GenomesOR2A12 
Exome Variant ServerOR2A12
ExAC (Exome Aggregation Consortium)ENSG00000221858
GNOMAD BrowserENSG00000221858
Genetic variants : HAPMAP346525
Genomic Variants (DGV)OR2A12 [DGVbeta]
DECIPHEROR2A12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2A12 
Mutations
ICGC Data PortalOR2A12 
TCGA Data PortalOR2A12 
Broad Tumor PortalOR2A12
OASIS PortalOR2A12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2A12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2A12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2A12
DgiDB (Drug Gene Interaction Database)OR2A12
DoCM (Curated mutations)OR2A12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2A12 (select a term)
intoGenOR2A12
Cancer3DOR2A12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR2A12
Genetic Testing Registry OR2A12
NextProtQ8NGT7 [Medical]
TSGene346525
GENETestsOR2A12
Target ValidationOR2A12
Huge Navigator OR2A12 [HugePedia]
snp3D : Map Gene to Disease346525
BioCentury BCIQOR2A12
ClinGenOR2A12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD346525
Chemical/Pharm GKB GenePA32104
Clinical trialOR2A12
Miscellaneous
canSAR (ICR)OR2A12 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2A12
EVEXOR2A12
GoPubMedOR2A12
iHOPOR2A12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:20:15 CET 2017

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