Atlas of Genetics and Cytogenetics in Oncology and Haematology

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OR2A25 (olfactory receptor family 2 subfamily A member 25)

Identity

Alias_namesOR2A25P
OR2A27
olfactory receptor, family 2, subfamily A, member 25
Other aliasOR2A24P
HGNC (Hugo) OR2A25
LocusID (NCBI) 392138
Atlas_Id 71234
Location 7q35  [Link to chromosome band 7q35]
Location_base_pair Starts at 144074220 and ends at 144075152 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OR2A25   19562
Cards
Entrez_Gene (NCBI)OR2A25  392138  olfactory receptor family 2 subfamily A member 25
AliasesOR2A24P; OR2A25P; OR2A27
GeneCards (Weizmann)OR2A25
Ensembl hg19 (Hinxton)ENSG00000221933 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221933 [Gene_View]  ENSG00000221933 [Sequence]  chr7:144074220-144075152 [Contig_View]  OR2A25 [Vega]
ICGC DataPortalENSG00000221933
TCGA cBioPortalOR2A25
AceView (NCBI)OR2A25
Genatlas (Paris)OR2A25
WikiGenes392138
SOURCE (Princeton)OR2A25
Genetics Home Reference (NIH)OR2A25
Genomic and cartography
GoldenPath hg38 (UCSC)OR2A25  -     chr7:144074220-144075152 +  7q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2A25  -     7q35   [Description]    (hg19-Feb_2009)
GoldenPathOR2A25 - 7q35 [CytoView hg19]  OR2A25 - 7q35 [CytoView hg38]
ImmunoBaseENSG00000221933
Mapping of homologs : NCBIOR2A25 [Mapview hg19]  OR2A25 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136814 BC136829
RefSeq transcript (Entrez)NM_001004488
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR2A25
Cluster EST : UnigeneHs.553787 [ NCBI ]
CGAP (NCI)Hs.553787
Alternative Splicing GalleryENSG00000221933
Gene ExpressionOR2A25 [ NCBI-GEO ]   OR2A25 [ EBI - ARRAY_EXPRESS ]   OR2A25 [ SEEK ]   OR2A25 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2A25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)392138
GTEX Portal (Tissue expression)OR2A25
Human Protein AtlasENSG00000221933-OR2A25 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA4D2G3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA4D2G3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA4D2G3
Splice isoforms : SwissVarA4D2G3
PhosPhoSitePlusA4D2G3
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR2A25
DMDM Disease mutations392138
Blocks (Seattle)OR2A25
SuperfamilyA4D2G3
Human Protein Atlas [tissue]ENSG00000221933-OR2A25 [tissue]
Peptide AtlasA4D2G3
HPRD17691
IPIIPI00398221   
Protein Interaction databases
DIP (DOE-UCLA)A4D2G3
IntAct (EBI)A4D2G3
FunCoupENSG00000221933
BioGRIDOR2A25
STRING (EMBL)OR2A25
ZODIACOR2A25
Ontologies - Pathways
QuickGOA4D2G3
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR2A25
Atlas of Cancer Signalling NetworkOR2A25
Wikipedia pathwaysOR2A25
Orthology - Evolution
OrthoDB392138
GeneTree (enSembl)ENSG00000221933
Phylogenetic Trees/Animal Genes : TreeFamOR2A25
HOGENOMA4D2G3
Homologs : HomoloGeneOR2A25
Homology/Alignments : Family Browser (UCSC)OR2A25
Gene fusions - Rearrangements
Fusion : QuiverOR2A25
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2A25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2A25
dbVarOR2A25
ClinVarOR2A25
1000_GenomesOR2A25 
Exome Variant ServerOR2A25
ExAC (Exome Aggregation Consortium)ENSG00000221933
GNOMAD BrowserENSG00000221933
Varsome BrowserOR2A25
Genetic variants : HAPMAP392138
Genomic Variants (DGV)OR2A25 [DGVbeta]
DECIPHEROR2A25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2A25 
Mutations
ICGC Data PortalOR2A25 
TCGA Data PortalOR2A25 
Broad Tumor PortalOR2A25
OASIS PortalOR2A25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2A25  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOR2A25
Mutations and Diseases : HGMDOR2A25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2A25
DgiDB (Drug Gene Interaction Database)OR2A25
DoCM (Curated mutations)OR2A25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2A25 (select a term)
intoGenOR2A25
Cancer3DOR2A25(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR2A25
MedgenOR2A25
Genetic Testing Registry OR2A25
NextProtA4D2G3 [Medical]
TSGene392138
GENETestsOR2A25
Target ValidationOR2A25
Huge Navigator OR2A25 [HugePedia]
snp3D : Map Gene to Disease392138
BioCentury BCIQOR2A25
ClinGenOR2A25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD392138
Chemical/Pharm GKB GenePA134892120
Clinical trialOR2A25
Miscellaneous
canSAR (ICR)OR2A25 (select the gene name)
DataMed IndexOR2A25
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2A25
EVEXOR2A25
GoPubMedOR2A25
iHOPOR2A25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:58:59 CEST 2019
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