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OR2A4 (olfactory receptor family 2 subfamily A member 4)

Identity

Other aliasOR2A10
HGNC (Hugo) OR2A4
LocusID (NCBI) 79541
Atlas_Id 57516
Location 6q23.2  [Link to chromosome band 6q23]
Location_base_pair Starts at 131699644 and ends at 131701401 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2A4   14729
Cards
Entrez_Gene (NCBI)OR2A4  79541  olfactory receptor family 2 subfamily A member 4
AliasesOR2A10
GeneCards (Weizmann)OR2A4
Ensembl hg19 (Hinxton)ENSG00000180658 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180658 [Gene_View]  ENSG00000180658 [Sequence]  chr6:131699644-131701401 [Contig_View]  OR2A4 [Vega]
ICGC DataPortalENSG00000180658
TCGA cBioPortalOR2A4
AceView (NCBI)OR2A4
Genatlas (Paris)OR2A4
WikiGenes79541
SOURCE (Princeton)OR2A4
Genetics Home Reference (NIH)OR2A4
Genomic and cartography
GoldenPath hg38 (UCSC)OR2A4  -     chr6:131699644-131701401 -  6q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2A4  -     6q23.2   [Description]    (hg19-Feb_2009)
EnsemblOR2A4 - 6q23.2 [CytoView hg19]  OR2A4 - 6q23.2 [CytoView hg38]
Mapping of homologs : NCBIOR2A4 [Mapview hg19]  OR2A4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW863744 BC120953 BC120954 BF848491 BI020419
RefSeq transcript (Entrez)NM_030908
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR2A4
Cluster EST : UnigeneHs.734368 [ NCBI ]
CGAP (NCI)Hs.734368
Alternative Splicing GalleryENSG00000180658
Gene ExpressionOR2A4 [ NCBI-GEO ]   OR2A4 [ EBI - ARRAY_EXPRESS ]   OR2A4 [ SEEK ]   OR2A4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79541
GTEX Portal (Tissue expression)OR2A4
Human Protein AtlasENSG00000180658-OR2A4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95047   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95047  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95047
Splice isoforms : SwissVarO95047
PhosPhoSitePlusO95047
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR2A4
DMDM Disease mutations79541
Blocks (Seattle)OR2A4
SuperfamilyO95047
Human Protein Atlas [tissue]ENSG00000180658-OR2A4 [tissue]
Peptide AtlasO95047
IPIIPI00028233   
Protein Interaction databases
DIP (DOE-UCLA)O95047
IntAct (EBI)O95047
FunCoupENSG00000180658
BioGRIDOR2A4
STRING (EMBL)OR2A4
ZODIACOR2A4
Ontologies - Pathways
QuickGOO95047
Ontology : AmiGOmolecular_function  G protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  cleavage furrow  positive regulation of cytokinesis  regulation of actin cytoskeleton organization  detection of chemical stimulus involved in sensory perception of smell  recycling endosome  Flemming body  mitotic spindle pole  mitotic spindle midzone  
Ontology : EGO-EBImolecular_function  G protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  cleavage furrow  positive regulation of cytokinesis  regulation of actin cytoskeleton organization  detection of chemical stimulus involved in sensory perception of smell  recycling endosome  Flemming body  mitotic spindle pole  mitotic spindle midzone  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2A4
Atlas of Cancer Signalling NetworkOR2A4
Wikipedia pathwaysOR2A4
Orthology - Evolution
OrthoDB79541
GeneTree (enSembl)ENSG00000180658
Phylogenetic Trees/Animal Genes : TreeFamOR2A4
HOVERGENO95047
HOGENOMO95047
Homologs : HomoloGeneOR2A4
Homology/Alignments : Family Browser (UCSC)OR2A4
Gene fusions - Rearrangements
Fusion : QuiverOR2A4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2A4
dbVarOR2A4
ClinVarOR2A4
1000_GenomesOR2A4 
Exome Variant ServerOR2A4
ExAC (Exome Aggregation Consortium)ENSG00000180658
GNOMAD BrowserENSG00000180658
Varsome BrowserOR2A4
Genetic variants : HAPMAP79541
Genomic Variants (DGV)OR2A4 [DGVbeta]
DECIPHEROR2A4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2A4 
Mutations
ICGC Data PortalOR2A4 
TCGA Data PortalOR2A4 
Broad Tumor PortalOR2A4
OASIS PortalOR2A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2A4
BioMutasearch OR2A4
DgiDB (Drug Gene Interaction Database)OR2A4
DoCM (Curated mutations)OR2A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2A4 (select a term)
intoGenOR2A4
Cancer3DOR2A4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR2A4
MedgenOR2A4
Genetic Testing Registry OR2A4
NextProtO95047 [Medical]
TSGene79541
GENETestsOR2A4
Target ValidationOR2A4
Huge Navigator OR2A4 [HugePedia]
snp3D : Map Gene to Disease79541
BioCentury BCIQOR2A4
ClinGenOR2A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79541
Chemical/Pharm GKB GenePA32117
Clinical trialOR2A4
Miscellaneous
canSAR (ICR)OR2A4 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2A4
EVEXOR2A4
GoPubMedOR2A4
iHOPOR2A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:27:46 CET 2018

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