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OR2A42 (olfactory receptor family 2 subfamily A member 42)

Identity

Alias (NCBI)-
HGNC (Hugo) OR2A42
HGNC Previous nameolfactory receptor, family 2, subfamily A, member 42
LocusID (NCBI) 402317
Atlas_Id 71236
Location 7q35  [Link to chromosome band 7q35]
Location_base_pair Starts at 144231911 and ends at 144232843 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)OR2A42   31230
Cards
Entrez_Gene (NCBI)OR2A42    olfactory receptor family 2 subfamily A member 42
Aliases
GeneCards (Weizmann)OR2A42
Ensembl hg19 (Hinxton)ENSG00000212807 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000212807 [Gene_View]  ENSG00000212807 [Sequence]  chr7:144231911-144232843 [Contig_View]  OR2A42 [Vega]
ICGC DataPortalENSG00000212807
TCGA cBioPortalOR2A42
AceView (NCBI)OR2A42
Genatlas (Paris)OR2A42
SOURCE (Princeton)OR2A42
Genetics Home Reference (NIH)OR2A42
Genomic and cartography
GoldenPath hg38 (UCSC)OR2A42  -     chr7:144231911-144232843 -  7q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2A42  -     7q35   [Description]    (hg19-Feb_2009)
GoldenPathOR2A42 - 7q35 [CytoView hg19]  OR2A42 - 7q35 [CytoView hg38]
ImmunoBaseENSG00000212807
Genome Data Viewer NCBIOR2A42 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001001802
Consensus coding sequences : CCDS (NCBI)OR2A42
Gene ExpressionOR2A42 [ NCBI-GEO ]   OR2A42 [ EBI - ARRAY_EXPRESS ]   OR2A42 [ SEEK ]   OR2A42 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2A42 [ Firebrowse - Broad ]
GenevisibleExpression of OR2A42 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)402317
GTEX Portal (Tissue expression)OR2A42
Human Protein AtlasENSG00000212807-OR2A42 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGT9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGT9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGT9
PhosPhoSitePlusQ8NGT9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR2A42
SuperfamilyQ8NGT9
AlphaFold pdb e-kbQ8NGT9   
Human Protein Atlas [tissue]ENSG00000212807-OR2A42 [tissue]
HPRD18486
Protein Interaction databases
DIP (DOE-UCLA)Q8NGT9
IntAct (EBI)Q8NGT9
BioGRIDOR2A42
STRING (EMBL)OR2A42
ZODIACOR2A42
Ontologies - Pathways
QuickGOQ8NGT9
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR2A42
Atlas of Cancer Signalling NetworkOR2A42
Wikipedia pathwaysOR2A42
Orthology - Evolution
OrthoDB402317
GeneTree (enSembl)ENSG00000212807
Phylogenetic Trees/Animal Genes : TreeFamOR2A42
Homologs : HomoloGeneOR2A42
Homology/Alignments : Family Browser (UCSC)OR2A42
Gene fusions - Rearrangements
Fusion : QuiverOR2A42
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2A42 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2A42
dbVarOR2A42
ClinVarOR2A42
MonarchOR2A42
1000_GenomesOR2A42 
Exome Variant ServerOR2A42
GNOMAD BrowserENSG00000212807
Varsome BrowserOR2A42
ACMGOR2A42 variants
VarityQ8NGT9
Genomic Variants (DGV)OR2A42 [DGVbeta]
DECIPHEROR2A42 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2A42 
Mutations
ICGC Data PortalOR2A42 
TCGA Data PortalOR2A42 
Broad Tumor PortalOR2A42
OASIS PortalOR2A42 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2A42  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOR2A42
Mutations and Diseases : HGMDOR2A42
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaOR2A42
DgiDB (Drug Gene Interaction Database)OR2A42
DoCM (Curated mutations)OR2A42
CIViC (Clinical Interpretations of Variants in Cancer)OR2A42
Cancer3DOR2A42
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR2A42
MedgenOR2A42
Genetic Testing Registry OR2A42
NextProtQ8NGT9 [Medical]
GENETestsOR2A42
Target ValidationOR2A42
Huge Navigator OR2A42 [HugePedia]
ClinGenOR2A42
Clinical trials, drugs, therapy
MyCancerGenomeOR2A42
Protein Interactions : CTDOR2A42
Pharm GKB GenePA134971566
PharosQ8NGT9
Clinical trialOR2A42
Miscellaneous
canSAR (ICR)OR2A42
HarmonizomeOR2A42
DataMed IndexOR2A42
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXOR2A42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:14:00 CEST 2021

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