Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR2A42 (olfactory receptor family 2 subfamily A member 42)

Identity

Alias_namesolfactory receptor, family 2, subfamily A, member 42
Other alias-
HGNC (Hugo) OR2A42
LocusID (NCBI) 402317
Atlas_Id 71236
Location 7q35  [Link to chromosome band 7q35]
Location_base_pair Starts at 144231911 and ends at 144232843 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2A42   31230
Cards
Entrez_Gene (NCBI)OR2A42  402317  olfactory receptor family 2 subfamily A member 42
Aliases
GeneCards (Weizmann)OR2A42
Ensembl hg19 (Hinxton)ENSG00000212807 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000212807 [Gene_View]  chr7:144231911-144232843 [Contig_View]  OR2A42 [Vega]
ICGC DataPortalENSG00000212807
TCGA cBioPortalOR2A42
AceView (NCBI)OR2A42
Genatlas (Paris)OR2A42
WikiGenes402317
SOURCE (Princeton)OR2A42
Genetics Home Reference (NIH)OR2A42
Genomic and cartography
GoldenPath hg38 (UCSC)OR2A42  -     chr7:144231911-144232843 -  7q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2A42  -     7q35   [Description]    (hg19-Feb_2009)
EnsemblOR2A42 - 7q35 [CytoView hg19]  OR2A42 - 7q35 [CytoView hg38]
Mapping of homologs : NCBIOR2A42 [Mapview hg19]  OR2A42 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001001802
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR2A42
Cluster EST : UnigeneHs.591830 [ NCBI ]
CGAP (NCI)Hs.591830
Alternative Splicing GalleryENSG00000212807
Gene ExpressionOR2A42 [ NCBI-GEO ]   OR2A42 [ EBI - ARRAY_EXPRESS ]   OR2A42 [ SEEK ]   OR2A42 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2A42 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)402317
GTEX Portal (Tissue expression)OR2A42
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGT9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGT9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGT9
Splice isoforms : SwissVarQ8NGT9
PhosPhoSitePlusQ8NGT9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2A42
DMDM Disease mutations402317
Blocks (Seattle)OR2A42
SuperfamilyQ8NGT9
Human Protein AtlasENSG00000212807
Peptide AtlasQ8NGT9
HPRD18486
Protein Interaction databases
DIP (DOE-UCLA)Q8NGT9
IntAct (EBI)Q8NGT9
FunCoupENSG00000212807
BioGRIDOR2A42
STRING (EMBL)OR2A42
ZODIACOR2A42
Ontologies - Pathways
QuickGOQ8NGT9
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2A42
Atlas of Cancer Signalling NetworkOR2A42
Wikipedia pathwaysOR2A42
Orthology - Evolution
OrthoDB402317
GeneTree (enSembl)ENSG00000212807
Phylogenetic Trees/Animal Genes : TreeFamOR2A42
HOVERGENQ8NGT9
HOGENOMQ8NGT9
Homologs : HomoloGeneOR2A42
Homology/Alignments : Family Browser (UCSC)OR2A42
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2A42 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2A42
dbVarOR2A42
ClinVarOR2A42
1000_GenomesOR2A42 
Exome Variant ServerOR2A42
ExAC (Exome Aggregation Consortium)OR2A42 (select the gene name)
Genetic variants : HAPMAP402317
Genomic Variants (DGV)OR2A42 [DGVbeta]
DECIPHEROR2A42 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2A42 
Mutations
ICGC Data PortalOR2A42 
TCGA Data PortalOR2A42 
Broad Tumor PortalOR2A42
OASIS PortalOR2A42 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2A42  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2A42
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2A42
DgiDB (Drug Gene Interaction Database)OR2A42
DoCM (Curated mutations)OR2A42 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2A42 (select a term)
intoGenOR2A42
Cancer3DOR2A42(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR2A42
Genetic Testing Registry OR2A42
NextProtQ8NGT9 [Medical]
TSGene402317
GENETestsOR2A42
Huge Navigator OR2A42 [HugePedia]
snp3D : Map Gene to Disease402317
BioCentury BCIQOR2A42
ClinGenOR2A42
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD402317
Chemical/Pharm GKB GenePA134971566
Clinical trialOR2A42
Miscellaneous
canSAR (ICR)OR2A42 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2A42
EVEXOR2A42
GoPubMedOR2A42
iHOPOR2A42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:46:18 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.