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OR2AP1 (olfactory receptor family 2 subfamily AP member 1)

Identity

Alias_namesOR2AP1P
olfactory receptor, family 2, subfamily AP, member 1 pseudogene
olfactory receptor, family 2, subfamily AP, member 1
Other alias
HGNC (Hugo) OR2AP1
LocusID (NCBI) 121129
Atlas_Id 71244
Location 12q13.2  [Link to chromosome band 12q13]
Location_base_pair Starts at 55574415 and ends at 55575344 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2AP1   15335
Cards
Entrez_Gene (NCBI)OR2AP1  121129  olfactory receptor family 2 subfamily AP member 1
AliasesOR2AP1P
GeneCards (Weizmann)OR2AP1
Ensembl hg19 (Hinxton)ENSG00000179615 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179615 [Gene_View]  chr12:55574415-55575344 [Contig_View]  OR2AP1 [Vega]
ICGC DataPortalENSG00000179615
TCGA cBioPortalOR2AP1
AceView (NCBI)OR2AP1
Genatlas (Paris)OR2AP1
WikiGenes121129
SOURCE (Princeton)OR2AP1
Genetics Home Reference (NIH)OR2AP1
Genomic and cartography
GoldenPath hg38 (UCSC)OR2AP1  -     chr12:55574415-55575344 +  12q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2AP1  -     12q13.2   [Description]    (hg19-Feb_2009)
EnsemblOR2AP1 - 12q13.2 [CytoView hg19]  OR2AP1 - 12q13.2 [CytoView hg38]
Mapping of homologs : NCBIOR2AP1 [Mapview hg19]  OR2AP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001258285
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR2AP1
Cluster EST : UnigeneHs.742584 [ NCBI ]
CGAP (NCI)Hs.742584
Alternative Splicing GalleryENSG00000179615
Gene ExpressionOR2AP1 [ NCBI-GEO ]   OR2AP1 [ EBI - ARRAY_EXPRESS ]   OR2AP1 [ SEEK ]   OR2AP1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2AP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)121129
GTEX Portal (Tissue expression)OR2AP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGE2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGE2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGE2
Splice isoforms : SwissVarQ8NGE2
PhosPhoSitePlusQ8NGE2
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2AP1
DMDM Disease mutations121129
Blocks (Seattle)OR2AP1
SuperfamilyQ8NGE2
Human Protein AtlasENSG00000179615
Peptide AtlasQ8NGE2
IPIIPI00168991   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGE2
IntAct (EBI)Q8NGE2
FunCoupENSG00000179615
BioGRIDOR2AP1
STRING (EMBL)OR2AP1
ZODIACOR2AP1
Ontologies - Pathways
QuickGOQ8NGE2
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2AP1
Atlas of Cancer Signalling NetworkOR2AP1
Wikipedia pathwaysOR2AP1
Orthology - Evolution
OrthoDB121129
GeneTree (enSembl)ENSG00000179615
Phylogenetic Trees/Animal Genes : TreeFamOR2AP1
HOVERGENQ8NGE2
HOGENOMQ8NGE2
Homologs : HomoloGeneOR2AP1
Homology/Alignments : Family Browser (UCSC)OR2AP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2AP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2AP1
dbVarOR2AP1
ClinVarOR2AP1
1000_GenomesOR2AP1 
Exome Variant ServerOR2AP1
ExAC (Exome Aggregation Consortium)OR2AP1 (select the gene name)
Genetic variants : HAPMAP121129
Genomic Variants (DGV)OR2AP1 [DGVbeta]
DECIPHEROR2AP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2AP1 
Mutations
ICGC Data PortalOR2AP1 
TCGA Data PortalOR2AP1 
Broad Tumor PortalOR2AP1
OASIS PortalOR2AP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2AP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2AP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2AP1
DgiDB (Drug Gene Interaction Database)OR2AP1
DoCM (Curated mutations)OR2AP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2AP1 (select a term)
intoGenOR2AP1
Cancer3DOR2AP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR2AP1
Genetic Testing Registry OR2AP1
NextProtQ8NGE2 [Medical]
TSGene121129
GENETestsOR2AP1
Target ValidationOR2AP1
Huge Navigator OR2AP1 [HugePedia]
snp3D : Map Gene to Disease121129
BioCentury BCIQOR2AP1
ClinGenOR2AP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD121129
Chemical/Pharm GKB GenePA32135
Clinical trialOR2AP1
Miscellaneous
canSAR (ICR)OR2AP1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2AP1
EVEXOR2AP1
GoPubMedOR2AP1
iHOPOR2AP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:57 CEST 2017

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