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OR2AT4 (olfactory receptor, family 2, subfamily AT, member 4)

Identity

Alias_namesolfactory receptor, family 2, subfamily AT, member 4
Other aliasOR11-265
HGNC (Hugo) OR2AT4
LocusID (NCBI) 341152
Atlas_Id 71245
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 74799796 and ends at 74800758 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2AT4   19620
Cards
Entrez_Gene (NCBI)OR2AT4  341152  olfactory receptor, family 2, subfamily AT, member 4
AliasesOR11-265
GeneCards (Weizmann)OR2AT4
Ensembl hg19 (Hinxton)ENSG00000171561 [Gene_View]  chr11:74799796-74800758 [Contig_View]  OR2AT4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000171561 [Gene_View]  chr11:74799796-74800758 [Contig_View]  OR2AT4 [Vega]
ICGC DataPortalENSG00000171561
TCGA cBioPortalOR2AT4
AceView (NCBI)OR2AT4
Genatlas (Paris)OR2AT4
WikiGenes341152
SOURCE (Princeton)OR2AT4
Genetics Home Reference (NIH)OR2AT4
Genomic and cartography
GoldenPath hg19 (UCSC)OR2AT4  -     chr11:74799796-74800758 -  11q13.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR2AT4  -     11q13.4   [Description]    (hg38-Dec_2013)
EnsemblOR2AT4 - 11q13.4 [CytoView hg19]  OR2AT4 - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBIOR2AT4 [Mapview hg19]  OR2AT4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136958 BC136959
RefSeq transcript (Entrez)NM_001005285
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)OR2AT4
Cluster EST : UnigeneHs.554515 [ NCBI ]
CGAP (NCI)Hs.554515
Alternative Splicing GalleryENSG00000171561
Gene ExpressionOR2AT4 [ NCBI-GEO ]   OR2AT4 [ EBI - ARRAY_EXPRESS ]   OR2AT4 [ SEEK ]   OR2AT4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2AT4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)341152
GTEX Portal (Tissue expression)OR2AT4
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NND4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NND4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NND4
Splice isoforms : SwissVarA6NND4
PhosPhoSitePlusA6NND4
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)OR2AT4
DMDM Disease mutations341152
Blocks (Seattle)OR2AT4
SuperfamilyA6NND4
Human Protein AtlasENSG00000171561
Peptide AtlasA6NND4
HPRD17694
IPIIPI00465223   
Protein Interaction databases
DIP (DOE-UCLA)A6NND4
IntAct (EBI)A6NND4
FunCoupENSG00000171561
BioGRIDOR2AT4
STRING (EMBL)OR2AT4
ZODIACOR2AT4
Ontologies - Pathways
QuickGOA6NND4
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2AT4
Atlas of Cancer Signalling NetworkOR2AT4
Wikipedia pathwaysOR2AT4
Orthology - Evolution
OrthoDB341152
GeneTree (enSembl)ENSG00000171561
Phylogenetic Trees/Animal Genes : TreeFamOR2AT4
HOVERGENA6NND4
HOGENOMA6NND4
Homologs : HomoloGeneOR2AT4
Homology/Alignments : Family Browser (UCSC)OR2AT4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2AT4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2AT4
dbVarOR2AT4
ClinVarOR2AT4
1000_GenomesOR2AT4 
Exome Variant ServerOR2AT4
ExAC (Exome Aggregation Consortium)OR2AT4 (select the gene name)
Genetic variants : HAPMAP341152
Genomic Variants (DGV)OR2AT4 [DGVbeta]
DECIPHER (Syndromes)11:74799796-74800758  ENSG00000171561
CONAN: Copy Number AnalysisOR2AT4 
Mutations
ICGC Data PortalOR2AT4 
TCGA Data PortalOR2AT4 
Broad Tumor PortalOR2AT4
OASIS PortalOR2AT4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2AT4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2AT4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2AT4
DgiDB (Drug Gene Interaction Database)OR2AT4
DoCM (Curated mutations)OR2AT4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2AT4 (select a term)
intoGenOR2AT4
Cancer3DOR2AT4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR2AT4
Genetic Testing Registry OR2AT4
NextProtA6NND4 [Medical]
TSGene341152
GENETestsOR2AT4
Huge Navigator OR2AT4 [HugePedia]
snp3D : Map Gene to Disease341152
BioCentury BCIQOR2AT4
ClinGenOR2AT4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD341152
Chemical/Pharm GKB GenePA134941860
Clinical trialOR2AT4
Miscellaneous
canSAR (ICR)OR2AT4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2AT4
EVEXOR2AT4
GoPubMedOR2AT4
iHOPOR2AT4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:18 CET 2017

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