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OR2B6 (olfactory receptor family 2 subfamily B member 6)

Identity

Alias_namesOR2B6P
OR2B1
OR2B1P
OR2B5
olfactory receptor, family 2, subfamily B, member 6
Alias_symbol (synonym)OR6-31
dJ408B20.2
OR5-40
OR5-41
Other alias
HGNC (Hugo) OR2B6
LocusID (NCBI) 26212
Atlas_Id 71249
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 27957241 and ends at 27958182 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2B6   8241
Cards
Entrez_Gene (NCBI)OR2B6  26212  olfactory receptor family 2 subfamily B member 6
AliasesOR2B1; OR2B1P; OR2B5; OR2B6P; 
OR5-40; OR5-41; OR6-31; dJ408B20.2
GeneCards (Weizmann)OR2B6
Ensembl hg19 (Hinxton)ENSG00000124657 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124657 [Gene_View]  ENSG00000124657 [Sequence]  chr6:27957241-27958182 [Contig_View]  OR2B6 [Vega]
ICGC DataPortalENSG00000124657
TCGA cBioPortalOR2B6
AceView (NCBI)OR2B6
Genatlas (Paris)OR2B6
WikiGenes26212
SOURCE (Princeton)OR2B6
Genetics Home Reference (NIH)OR2B6
Genomic and cartography
GoldenPath hg38 (UCSC)OR2B6  -     chr6:27957241-27958182 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2B6  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblOR2B6 - 6p22.1 [CytoView hg19]  OR2B6 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIOR2B6 [Mapview hg19]  OR2B6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC109251 BC110457
RefSeq transcript (Entrez)NM_012367
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR2B6
Cluster EST : UnigeneHs.532145 [ NCBI ]
CGAP (NCI)Hs.532145
Alternative Splicing GalleryENSG00000124657
Gene ExpressionOR2B6 [ NCBI-GEO ]   OR2B6 [ EBI - ARRAY_EXPRESS ]   OR2B6 [ SEEK ]   OR2B6 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2B6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26212
GTEX Portal (Tissue expression)OR2B6
Human Protein AtlasENSG00000124657-OR2B6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP58173   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP58173  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP58173
Splice isoforms : SwissVarP58173
PhosPhoSitePlusP58173
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2B6
DMDM Disease mutations26212
Blocks (Seattle)OR2B6
SuperfamilyP58173
Human Protein Atlas [tissue]ENSG00000124657-OR2B6 [tissue]
Peptide AtlasP58173
HPRD17696
IPIIPI00011043   
Protein Interaction databases
DIP (DOE-UCLA)P58173
IntAct (EBI)P58173
FunCoupENSG00000124657
BioGRIDOR2B6
STRING (EMBL)OR2B6
ZODIACOR2B6
Ontologies - Pathways
QuickGOP58173
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR2B6
Atlas of Cancer Signalling NetworkOR2B6
Wikipedia pathwaysOR2B6
Orthology - Evolution
OrthoDB26212
GeneTree (enSembl)ENSG00000124657
Phylogenetic Trees/Animal Genes : TreeFamOR2B6
HOVERGENP58173
HOGENOMP58173
Homologs : HomoloGeneOR2B6
Homology/Alignments : Family Browser (UCSC)OR2B6
Gene fusions - Rearrangements
Fusion : QuiverOR2B6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2B6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2B6
dbVarOR2B6
ClinVarOR2B6
1000_GenomesOR2B6 
Exome Variant ServerOR2B6
ExAC (Exome Aggregation Consortium)ENSG00000124657
GNOMAD BrowserENSG00000124657
Varsome BrowserOR2B6
Genetic variants : HAPMAP26212
Genomic Variants (DGV)OR2B6 [DGVbeta]
DECIPHEROR2B6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2B6 
Mutations
ICGC Data PortalOR2B6 
TCGA Data PortalOR2B6 
Broad Tumor PortalOR2B6
OASIS PortalOR2B6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2B6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2B6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2B6
DgiDB (Drug Gene Interaction Database)OR2B6
DoCM (Curated mutations)OR2B6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2B6 (select a term)
intoGenOR2B6
Cancer3DOR2B6(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR2B6
MedgenOR2B6
Genetic Testing Registry OR2B6
NextProtP58173 [Medical]
TSGene26212
GENETestsOR2B6
Target ValidationOR2B6
Huge Navigator OR2B6 [HugePedia]
snp3D : Map Gene to Disease26212
BioCentury BCIQOR2B6
ClinGenOR2B6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26212
Chemical/Pharm GKB GenePA32144
Clinical trialOR2B6
Miscellaneous
canSAR (ICR)OR2B6 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2B6
EVEXOR2B6
GoPubMedOR2B6
iHOPOR2B6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:21:27 CEST 2018

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