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OR2C1 (olfactory receptor family 2 subfamily C member 1)

Identity

Alias_namesOR2C2P
olfactory receptor, family 2, subfamily C, member 1
Alias_symbol (synonym)OLFmf3
Other alias
HGNC (Hugo) OR2C1
LocusID (NCBI) 4993
Atlas_Id 71250
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 3355889 and ends at 3356924 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2C1   8242
Cards
Entrez_Gene (NCBI)OR2C1  4993  olfactory receptor family 2 subfamily C member 1
AliasesOLFmf3; OR2C2P
GeneCards (Weizmann)OR2C1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:3355889-3356924 [Contig_View]  OR2C1 [Vega]
TCGA cBioPortalOR2C1
AceView (NCBI)OR2C1
Genatlas (Paris)OR2C1
WikiGenes4993
SOURCE (Princeton)OR2C1
Genetics Home Reference (NIH)OR2C1
Genomic and cartography
GoldenPath hg38 (UCSC)OR2C1  -     chr16:3355889-3356924 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2C1  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblOR2C1 - 16p13.3 [CytoView hg19]  OR2C1 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIOR2C1 [Mapview hg19]  OR2C1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC069158 BC069456 BC126269 BC130328 HQ258169
RefSeq transcript (Entrez)NM_012368
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR2C1
Cluster EST : UnigeneHs.258574 [ NCBI ]
CGAP (NCI)Hs.258574
Gene ExpressionOR2C1 [ NCBI-GEO ]   OR2C1 [ EBI - ARRAY_EXPRESS ]   OR2C1 [ SEEK ]   OR2C1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2C1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4993
GTEX Portal (Tissue expression)OR2C1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95371   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95371  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95371
Splice isoforms : SwissVarO95371
PhosPhoSitePlusO95371
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2C1
DMDM Disease mutations4993
Blocks (Seattle)OR2C1
SuperfamilyO95371
Peptide AtlasO95371
HPRD10130
IPIIPI00030064   
Protein Interaction databases
DIP (DOE-UCLA)O95371
IntAct (EBI)O95371
BioGRIDOR2C1
STRING (EMBL)OR2C1
ZODIACOR2C1
Ontologies - Pathways
QuickGOO95371
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2C1
Atlas of Cancer Signalling NetworkOR2C1
Wikipedia pathwaysOR2C1
Orthology - Evolution
OrthoDB4993
Phylogenetic Trees/Animal Genes : TreeFamOR2C1
HOVERGENO95371
HOGENOMO95371
Homologs : HomoloGeneOR2C1
Homology/Alignments : Family Browser (UCSC)OR2C1
Gene fusions - Rearrangements
Fusion: Tumor Portal OR2C1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2C1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2C1
dbVarOR2C1
ClinVarOR2C1
1000_GenomesOR2C1 
Exome Variant ServerOR2C1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP4993
Genomic Variants (DGV)OR2C1 [DGVbeta]
DECIPHEROR2C1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2C1 
Mutations
ICGC Data PortalOR2C1 
TCGA Data PortalOR2C1 
Broad Tumor PortalOR2C1
OASIS PortalOR2C1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2C1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2C1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2C1
DgiDB (Drug Gene Interaction Database)OR2C1
DoCM (Curated mutations)OR2C1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2C1 (select a term)
intoGenOR2C1
Cancer3DOR2C1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR2C1
Genetic Testing Registry OR2C1
NextProtO95371 [Medical]
TSGene4993
GENETestsOR2C1
Target ValidationOR2C1
Huge Navigator OR2C1 [HugePedia]
snp3D : Map Gene to Disease4993
BioCentury BCIQOR2C1
ClinGenOR2C1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4993
Chemical/Pharm GKB GenePA32147
Clinical trialOR2C1
Miscellaneous
canSAR (ICR)OR2C1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2C1
EVEXOR2C1
GoPubMedOR2C1
iHOPOR2C1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:20:19 CET 2017

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