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OR2C3 (olfactory receptor family 2 subfamily C member 3)

Identity

Alias_namesOR2C4
OR2C5P
olfactory receptor, family 2, subfamily C, member 4
olfactory receptor, family 2, subfamily C, member 3
Alias_symbol (synonym)OST742
Other alias
HGNC (Hugo) OR2C3
LocusID (NCBI) 81472
Atlas_Id 71251
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 247530132 and ends at 247533839 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2C3   15005
Cards
Entrez_Gene (NCBI)OR2C3  81472  olfactory receptor family 2 subfamily C member 3
AliasesOR2C4; OR2C5P; OST742
GeneCards (Weizmann)OR2C3
Ensembl hg19 (Hinxton)ENSG00000196242 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196242 [Gene_View]  chr1:247530132-247533839 [Contig_View]  OR2C3 [Vega]
ICGC DataPortalENSG00000196242
TCGA cBioPortalOR2C3
AceView (NCBI)OR2C3
Genatlas (Paris)OR2C3
WikiGenes81472
SOURCE (Princeton)OR2C3
Genetics Home Reference (NIH)OR2C3
Genomic and cartography
GoldenPath hg38 (UCSC)OR2C3  -     chr1:247530132-247533839 -  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2C3  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblOR2C3 - 1q44 [CytoView hg19]  OR2C3 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIOR2C3 [Mapview hg19]  OR2C3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC030717 DQ895515 EU176346
RefSeq transcript (Entrez)NM_198074
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR2C3
Cluster EST : UnigeneHs.730218 [ NCBI ]
CGAP (NCI)Hs.730218
Alternative Splicing GalleryENSG00000196242
Gene ExpressionOR2C3 [ NCBI-GEO ]   OR2C3 [ EBI - ARRAY_EXPRESS ]   OR2C3 [ SEEK ]   OR2C3 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2C3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81472
GTEX Portal (Tissue expression)OR2C3
Human Protein AtlasENSG00000196242-OR2C3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N628   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N628  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N628
Splice isoforms : SwissVarQ8N628
PhosPhoSitePlusQ8N628
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2C3
DMDM Disease mutations81472
Blocks (Seattle)OR2C3
SuperfamilyQ8N628
Human Protein Atlas [tissue]ENSG00000196242-OR2C3 [tissue]
Peptide AtlasQ8N628
HPRD17697
IPIIPI00935359   
Protein Interaction databases
DIP (DOE-UCLA)Q8N628
IntAct (EBI)Q8N628
FunCoupENSG00000196242
BioGRIDOR2C3
STRING (EMBL)OR2C3
ZODIACOR2C3
Ontologies - Pathways
QuickGOQ8N628
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  nucleus  cytosol  plasma membrane  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  nucleus  cytosol  plasma membrane  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2C3
Atlas of Cancer Signalling NetworkOR2C3
Wikipedia pathwaysOR2C3
Orthology - Evolution
OrthoDB81472
GeneTree (enSembl)ENSG00000196242
Phylogenetic Trees/Animal Genes : TreeFamOR2C3
HOVERGENQ8N628
HOGENOMQ8N628
Homologs : HomoloGeneOR2C3
Homology/Alignments : Family Browser (UCSC)OR2C3
Gene fusions - Rearrangements
Tumor Fusion PortalOR2C3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2C3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2C3
dbVarOR2C3
ClinVarOR2C3
1000_GenomesOR2C3 
Exome Variant ServerOR2C3
ExAC (Exome Aggregation Consortium)ENSG00000196242
GNOMAD BrowserENSG00000196242
Genetic variants : HAPMAP81472
Genomic Variants (DGV)OR2C3 [DGVbeta]
DECIPHEROR2C3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2C3 
Mutations
ICGC Data PortalOR2C3 
TCGA Data PortalOR2C3 
Broad Tumor PortalOR2C3
OASIS PortalOR2C3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2C3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2C3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2C3
DgiDB (Drug Gene Interaction Database)OR2C3
DoCM (Curated mutations)OR2C3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2C3 (select a term)
intoGenOR2C3
Cancer3DOR2C3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR2C3
MedgenOR2C3
Genetic Testing Registry OR2C3
NextProtQ8N628 [Medical]
TSGene81472
GENETestsOR2C3
Target ValidationOR2C3
Huge Navigator OR2C3 [HugePedia]
snp3D : Map Gene to Disease81472
BioCentury BCIQOR2C3
ClinGenOR2C3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81472
Chemical/Pharm GKB GenePA32149
Clinical trialOR2C3
Miscellaneous
canSAR (ICR)OR2C3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2C3
EVEXOR2C3
GoPubMedOR2C3
iHOPOR2C3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:02:06 CET 2017

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