Atlas of Genetics and Cytogenetics in Oncology and Haematology

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OR2D2 (olfactory receptor family 2 subfamily D member 2)

Identity

Alias (NCBI)OR11-610
OR2D1
hg27
HGNC (Hugo) OR2D2
HGNC Alias symbOR11-610
hg27
HGNC Previous nameOR2D1
HGNC Previous nameolfactory receptor, family 2, subfamily D, member 2
LocusID (NCBI) 120776
Atlas_Id 71252
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 6891574 and ends at 6892500 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OR2D2   8244
Cards
Entrez_Gene (NCBI)OR2D2    olfactory receptor family 2 subfamily D member 2
AliasesOR11-610; OR2D1; hg27
GeneCards (Weizmann)OR2D2
Ensembl hg19 (Hinxton)ENSG00000166368 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166368 [Gene_View]  ENSG00000166368 [Sequence]  chr11:6891574-6892500 [Contig_View]  OR2D2 [Vega]
ICGC DataPortalENSG00000166368
TCGA cBioPortalOR2D2
AceView (NCBI)OR2D2
Genatlas (Paris)OR2D2
SOURCE (Princeton)OR2D2
Genetics Home Reference (NIH)OR2D2
Genomic and cartography
GoldenPath hg38 (UCSC)OR2D2  -     chr11:6891574-6892500 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2D2  -     11p15.4   [Description]    (hg19-Feb_2009)
GoldenPathOR2D2 - 11p15.4 [CytoView hg19]  OR2D2 - 11p15.4 [CytoView hg38]
ImmunoBaseENSG00000166368
genome Data Viewer NCBIOR2D2 [Mapview hg19]  
OMIM608494   
Gene and transcription
Genbank (Entrez)BC140729
RefSeq transcript (Entrez)NM_003700
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR2D2
Alternative Splicing GalleryENSG00000166368
Gene ExpressionOR2D2 [ NCBI-GEO ]   OR2D2 [ EBI - ARRAY_EXPRESS ]   OR2D2 [ SEEK ]   OR2D2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2D2 [ Firebrowse - Broad ]
GenevisibleExpression of OR2D2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)120776
GTEX Portal (Tissue expression)OR2D2
Human Protein AtlasENSG00000166368-OR2D2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H210   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H210  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H210
Splice isoforms : SwissVarQ9H210
PhosPhoSitePlusQ9H210
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR2D2
Blocks (Seattle)OR2D2
SuperfamilyQ9H210
Human Protein Atlas [tissue]ENSG00000166368-OR2D2 [tissue]
Peptide AtlasQ9H210
HPRD12247
IPIIPI00022355   
Protein Interaction databases
DIP (DOE-UCLA)Q9H210
IntAct (EBI)Q9H210
BioGRIDOR2D2
STRING (EMBL)OR2D2
ZODIACOR2D2
Ontologies - Pathways
QuickGOQ9H210
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR2D2
Atlas of Cancer Signalling NetworkOR2D2
Wikipedia pathwaysOR2D2
Orthology - Evolution
OrthoDB120776
GeneTree (enSembl)ENSG00000166368
Phylogenetic Trees/Animal Genes : TreeFamOR2D2
HOGENOMQ9H210
Homologs : HomoloGeneOR2D2
Homology/Alignments : Family Browser (UCSC)OR2D2
Gene fusions - Rearrangements
Fusion : QuiverOR2D2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2D2 [hg38]
dbVarOR2D2
ClinVarOR2D2
MonarchOR2D2
1000_GenomesOR2D2 
Exome Variant ServerOR2D2
GNOMAD BrowserENSG00000166368
Varsome BrowserOR2D2
Genomic Variants (DGV)OR2D2 [DGVbeta]
DECIPHEROR2D2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2D2 
Mutations
ICGC Data PortalOR2D2 
TCGA Data PortalOR2D2 
Broad Tumor PortalOR2D2
OASIS PortalOR2D2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2D2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOR2D2
Mutations and Diseases : HGMDOR2D2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2D2
DgiDB (Drug Gene Interaction Database)OR2D2
DoCM (Curated mutations)OR2D2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2D2 (select a term)
intoGenOR2D2
Cancer3DOR2D2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608494   
Orphanet
DisGeNETOR2D2
MedgenOR2D2
Genetic Testing Registry OR2D2
NextProtQ9H210 [Medical]
GENETestsOR2D2
Target ValidationOR2D2
Huge Navigator OR2D2 [HugePedia]
ClinGenOR2D2
Clinical trials, drugs, therapy
MyCancerGenomeOR2D2
Protein Interactions : CTD
Pharm GKB GenePA32152
Clinical trialOR2D2
Miscellaneous
canSAR (ICR)OR2D2 (select the gene name)
HarmonizomeOR2D2
DataMed IndexOR2D2
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2D2
EVEXOR2D2
GoPubMedOR2D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:20:25 CET 2020
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