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OR2D3 (olfactory receptor, family 2, subfamily D, member 3)

Identity

Alias_namesolfactory receptor, family 2, subfamily D, member 3
Other aliasOR11-89
HGNC (Hugo) OR2D3
LocusID (NCBI) 120775
Atlas_Id 71253
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 6942233 and ends at 6943225 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2D3   15146
Cards
Entrez_Gene (NCBI)OR2D3  120775  olfactory receptor, family 2, subfamily D, member 3
AliasesOR11-89
GeneCards (Weizmann)OR2D3
Ensembl hg19 (Hinxton)ENSG00000178358 [Gene_View]  chr11:6942233-6943225 [Contig_View]  OR2D3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000178358 [Gene_View]  chr11:6942233-6943225 [Contig_View]  OR2D3 [Vega]
ICGC DataPortalENSG00000178358
TCGA cBioPortalOR2D3
AceView (NCBI)OR2D3
Genatlas (Paris)OR2D3
WikiGenes120775
SOURCE (Princeton)OR2D3
Genetics Home Reference (NIH)OR2D3
Genomic and cartography
GoldenPath hg19 (UCSC)OR2D3  -     chr11:6942233-6943225 +  11p15.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR2D3  -     11p15.4   [Description]    (hg38-Dec_2013)
EnsemblOR2D3 - 11p15.4 [CytoView hg19]  OR2D3 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR2D3 [Mapview hg19]  OR2D3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137208 BC137209
RefSeq transcript (Entrez)NM_001004684
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)OR2D3
Cluster EST : UnigeneHs.446766 [ NCBI ]
CGAP (NCI)Hs.446766
Alternative Splicing GalleryENSG00000178358
Gene ExpressionOR2D3 [ NCBI-GEO ]   OR2D3 [ EBI - ARRAY_EXPRESS ]   OR2D3 [ SEEK ]   OR2D3 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2D3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)120775
GTEX Portal (Tissue expression)OR2D3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGH3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGH3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGH3
Splice isoforms : SwissVarQ8NGH3
PhosPhoSitePlusQ8NGH3
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2D3
DMDM Disease mutations120775
Blocks (Seattle)OR2D3
SuperfamilyQ8NGH3
Human Protein AtlasENSG00000178358
Peptide AtlasQ8NGH3
HPRD17698
IPIIPI00169016   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGH3
IntAct (EBI)Q8NGH3
FunCoupENSG00000178358
BioGRIDOR2D3
STRING (EMBL)OR2D3
ZODIACOR2D3
Ontologies - Pathways
QuickGOQ8NGH3
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2D3
Atlas of Cancer Signalling NetworkOR2D3
Wikipedia pathwaysOR2D3
Orthology - Evolution
OrthoDB120775
GeneTree (enSembl)ENSG00000178358
Phylogenetic Trees/Animal Genes : TreeFamOR2D3
HOVERGENQ8NGH3
HOGENOMQ8NGH3
Homologs : HomoloGeneOR2D3
Homology/Alignments : Family Browser (UCSC)OR2D3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2D3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2D3
dbVarOR2D3
ClinVarOR2D3
1000_GenomesOR2D3 
Exome Variant ServerOR2D3
ExAC (Exome Aggregation Consortium)OR2D3 (select the gene name)
Genetic variants : HAPMAP120775
Genomic Variants (DGV)OR2D3 [DGVbeta]
DECIPHER (Syndromes)11:6942233-6943225  ENSG00000178358
CONAN: Copy Number AnalysisOR2D3 
Mutations
ICGC Data PortalOR2D3 
TCGA Data PortalOR2D3 
Broad Tumor PortalOR2D3
OASIS PortalOR2D3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2D3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2D3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2D3
DgiDB (Drug Gene Interaction Database)OR2D3
DoCM (Curated mutations)OR2D3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2D3 (select a term)
intoGenOR2D3
Cancer3DOR2D3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR2D3
Genetic Testing Registry OR2D3
NextProtQ8NGH3 [Medical]
TSGene120775
GENETestsOR2D3
Huge Navigator OR2D3 [HugePedia]
snp3D : Map Gene to Disease120775
BioCentury BCIQOR2D3
ClinGenOR2D3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD120775
Chemical/Pharm GKB GenePA32153
Clinical trialOR2D3
Miscellaneous
canSAR (ICR)OR2D3 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2D3
EVEXOR2D3
GoPubMedOR2D3
iHOPOR2D3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:20 CET 2017

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