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OR2F1 (olfactory receptor, family 2, subfamily F, member 1 (gene/pseudogene))

Identity

Alias_namesOR2F4
OR2F5
OR2F3
OR2F3P
olfactory receptor, family 2, subfamily F, member 1
olfactory receptor, family 2, subfamily F, member 1 (gene/pseudogene)
Alias_symbol (synonym)OLF3
OR7-140
OR7-139
OR14-60
Other alias7M1-2
HGNC (Hugo) OR2F1
LocusID (NCBI) 26211
Atlas_Id 71254
Location 7q35  [Link to chromosome band 7q35]
Location_base_pair Starts at 143657020 and ends at 143658108 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2F1   8246
Cards
Entrez_Gene (NCBI)OR2F1  26211  olfactory receptor, family 2, subfamily F, member 1 (gene/pseudogene)
Aliases7M1-2; OLF3; OR14-60; OR2F3; 
OR2F3P; OR2F4; OR2F5; OR7-139; OR7-140
GeneCards (Weizmann)OR2F1
Ensembl hg19 (Hinxton)ENSG00000213215 [Gene_View]  chr7:143657020-143658108 [Contig_View]  OR2F1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000213215 [Gene_View]  chr7:143657020-143658108 [Contig_View]  OR2F1 [Vega]
ICGC DataPortalENSG00000213215
TCGA cBioPortalOR2F1
AceView (NCBI)OR2F1
Genatlas (Paris)OR2F1
WikiGenes26211
SOURCE (Princeton)OR2F1
Genetics Home Reference (NIH)OR2F1
Genomic and cartography
GoldenPath hg19 (UCSC)OR2F1  -     chr7:143657020-143658108 +  7q35   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR2F1  -     7q35   [Description]    (hg38-Dec_2013)
EnsemblOR2F1 - 7q35 [CytoView hg19]  OR2F1 - 7q35 [CytoView hg38]
Mapping of homologs : NCBIOR2F1 [Mapview hg19]  OR2F1 [Mapview hg38]
OMIM608497   
Gene and transcription
Genbank (Entrez)AJ459868 AJ459869 BC104975 HG500692 HG500693
RefSeq transcript (Entrez)NM_012369
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929333
Consensus coding sequences : CCDS (NCBI)OR2F1
Cluster EST : UnigeneHs.623929 [ NCBI ]
CGAP (NCI)Hs.623929
Alternative Splicing GalleryENSG00000213215
Gene ExpressionOR2F1 [ NCBI-GEO ]   OR2F1 [ EBI - ARRAY_EXPRESS ]   OR2F1 [ SEEK ]   OR2F1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2F1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26211
GTEX Portal (Tissue expression)OR2F1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13607   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13607  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13607
Splice isoforms : SwissVarQ13607
PhosPhoSitePlusQ13607
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2F1
DMDM Disease mutations26211
Blocks (Seattle)OR2F1
SuperfamilyQ13607
Human Protein AtlasENSG00000213215
Peptide AtlasQ13607
HPRD16340
IPIIPI00299181   
Protein Interaction databases
DIP (DOE-UCLA)Q13607
IntAct (EBI)Q13607
FunCoupENSG00000213215
BioGRIDOR2F1
STRING (EMBL)OR2F1
ZODIACOR2F1
Ontologies - Pathways
QuickGOQ13607
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2F1
Atlas of Cancer Signalling NetworkOR2F1
Wikipedia pathwaysOR2F1
Orthology - Evolution
OrthoDB26211
GeneTree (enSembl)ENSG00000213215
Phylogenetic Trees/Animal Genes : TreeFamOR2F1
HOVERGENQ13607
HOGENOMQ13607
Homologs : HomoloGeneOR2F1
Homology/Alignments : Family Browser (UCSC)OR2F1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2F1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2F1
dbVarOR2F1
ClinVarOR2F1
1000_GenomesOR2F1 
Exome Variant ServerOR2F1
ExAC (Exome Aggregation Consortium)OR2F1 (select the gene name)
Genetic variants : HAPMAP26211
Genomic Variants (DGV)OR2F1 [DGVbeta]
DECIPHER (Syndromes)7:143657020-143658108  ENSG00000213215
CONAN: Copy Number AnalysisOR2F1 
Mutations
ICGC Data PortalOR2F1 
TCGA Data PortalOR2F1 
Broad Tumor PortalOR2F1
OASIS PortalOR2F1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2F1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2F1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2F1
DgiDB (Drug Gene Interaction Database)OR2F1
DoCM (Curated mutations)OR2F1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2F1 (select a term)
intoGenOR2F1
Cancer3DOR2F1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608497   
Orphanet
MedgenOR2F1
Genetic Testing Registry OR2F1
NextProtQ13607 [Medical]
TSGene26211
GENETestsOR2F1
Huge Navigator OR2F1 [HugePedia]
snp3D : Map Gene to Disease26211
BioCentury BCIQOR2F1
ClinGenOR2F1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26211
Chemical/Pharm GKB GenePA32155
Clinical trialOR2F1
Miscellaneous
canSAR (ICR)OR2F1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2F1
EVEXOR2F1
GoPubMedOR2F1
iHOPOR2F1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:20 CET 2017

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