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OR2H1 (olfactory receptor family 2 subfamily H member 1)

Identity

Alias_namesOR2H6
OR2H8
olfactory receptor, family 2, subfamily H, member 8
olfactory receptor, family 2, subfamily H, member 1
Alias_symbol (synonym)OR6-2
Other alias6M1-16
HS6M1-16
OLFR42A-9004-14
OLFR42A-9004.14/9026.2
dJ994E9.4
HGNC (Hugo) OR2H1
LocusID (NCBI) 26716
Atlas_Id 71259
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 29457155 and ends at 29464322 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRERF1 (6p21.1) / OR2H1 (6p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(p21;p22) TRERF1/OR2H1


External links

Nomenclature
HGNC (Hugo)OR2H1   8252
Cards
Entrez_Gene (NCBI)OR2H1  26716  olfactory receptor family 2 subfamily H member 1
Aliases6M1-16; HS6M1-16; OLFR42A-9004-14; OLFR42A-9004.14/9026.2; 
OR2H6; OR2H8; OR6-2; dJ994E9.4
GeneCards (Weizmann)OR2H1
Ensembl hg19 (Hinxton)ENSG00000204688 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204688 [Gene_View]  ENSG00000204688 [Sequence]  chr6:29457155-29464322 [Contig_View]  OR2H1 [Vega]
ICGC DataPortalENSG00000204688
TCGA cBioPortalOR2H1
AceView (NCBI)OR2H1
Genatlas (Paris)OR2H1
WikiGenes26716
SOURCE (Princeton)OR2H1
Genetics Home Reference (NIH)OR2H1
Genomic and cartography
GoldenPath hg38 (UCSC)OR2H1  -     chr6:29457155-29464322 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2H1  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblOR2H1 - 6p22.1 [CytoView hg19]  OR2H1 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIOR2H1 [Mapview hg19]  OR2H1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ459835 AJ459836 AJ459838 AJ459840 AJ459843
RefSeq transcript (Entrez)NM_001318014 NM_001318022 NM_030883
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)OR2H1
Cluster EST : UnigeneHs.740793 [ NCBI ]
CGAP (NCI)Hs.740793
Alternative Splicing GalleryENSG00000204688
Gene ExpressionOR2H1 [ NCBI-GEO ]   OR2H1 [ EBI - ARRAY_EXPRESS ]   OR2H1 [ SEEK ]   OR2H1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2H1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26716
GTEX Portal (Tissue expression)OR2H1
Human Protein AtlasENSG00000204688-OR2H1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZK4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZK4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZK4
Splice isoforms : SwissVarQ9GZK4
PhosPhoSitePlusQ9GZK4
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2H1
DMDM Disease mutations26716
Blocks (Seattle)OR2H1
SuperfamilyQ9GZK4
Human Protein Atlas [tissue]ENSG00000204688-OR2H1 [tissue]
Peptide AtlasQ9GZK4
HPRD17699
IPIIPI00026293   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZK4
IntAct (EBI)Q9GZK4
FunCoupENSG00000204688
BioGRIDOR2H1
STRING (EMBL)OR2H1
ZODIACOR2H1
Ontologies - Pathways
QuickGOQ9GZK4
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR2H1
Atlas of Cancer Signalling NetworkOR2H1
Wikipedia pathwaysOR2H1
Orthology - Evolution
OrthoDB26716
GeneTree (enSembl)ENSG00000204688
Phylogenetic Trees/Animal Genes : TreeFamOR2H1
HOVERGENQ9GZK4
HOGENOMQ9GZK4
Homologs : HomoloGeneOR2H1
Homology/Alignments : Family Browser (UCSC)OR2H1
Gene fusions - Rearrangements
Fusion : QuiverOR2H1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2H1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2H1
dbVarOR2H1
ClinVarOR2H1
1000_GenomesOR2H1 
Exome Variant ServerOR2H1
ExAC (Exome Aggregation Consortium)ENSG00000204688
GNOMAD BrowserENSG00000204688
Varsome BrowserOR2H1
Genetic variants : HAPMAP26716
Genomic Variants (DGV)OR2H1 [DGVbeta]
DECIPHEROR2H1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2H1 
Mutations
ICGC Data PortalOR2H1 
TCGA Data PortalOR2H1 
Broad Tumor PortalOR2H1
OASIS PortalOR2H1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2H1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2H1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2H1
DgiDB (Drug Gene Interaction Database)OR2H1
DoCM (Curated mutations)OR2H1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2H1 (select a term)
intoGenOR2H1
Cancer3DOR2H1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR2H1
MedgenOR2H1
Genetic Testing Registry OR2H1
NextProtQ9GZK4 [Medical]
TSGene26716
GENETestsOR2H1
Target ValidationOR2H1
Huge Navigator OR2H1 [HugePedia]
snp3D : Map Gene to Disease26716
BioCentury BCIQOR2H1
ClinGenOR2H1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26716
Chemical/Pharm GKB GenePA32161
Clinical trialOR2H1
Miscellaneous
canSAR (ICR)OR2H1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2H1
EVEXOR2H1
GoPubMedOR2H1
iHOPOR2H1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:21:30 CEST 2018

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