Atlas of Genetics and Cytogenetics in Oncology and Haematology

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OR2J1 (olfactory receptor family 2 subfamily J member 1 (gene/pseudogene))

Identity

Alias (NCBI)6M1-4P
OR2J1P
OR6-15
OR6-5
dJ80I19.2
hs6M1-4
HGNC (Hugo) OR2J1
HGNC Alias symbOR6-5
hs6M1-4
dJ80I19.2
HGNC Previous nameOR2J1P
HGNC Previous nameolfactory receptor, family 2, subfamily J, member 1 pseudogene
 olfactory receptor, family 2, subfamily J, member 1
 olfactory receptor, family 2, subfamily J, member 1 (gene/pseudogene)
LocusID (NCBI) 442185
Atlas_Id 79187
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 29100843 and ends at 29101978 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OR2J1   8259
Cards
Entrez_Gene (NCBI)OR2J1    olfactory receptor family 2 subfamily J member 1 (gene/pseudogene)
Aliases6M1-4P; OR2J1P; OR6-15; OR6-5; 
dJ80I19.2; hs6M1-4
GeneCards (Weizmann)OR2J1
Ensembl hg19 (Hinxton)ENSG00000204702 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204702 [Gene_View]  ENSG00000204702 [Sequence]  chr6:29100843-29101978 [Contig_View]  OR2J1 [Vega]
ICGC DataPortalENSG00000204702
TCGA cBioPortalOR2J1
AceView (NCBI)OR2J1
Genatlas (Paris)OR2J1
SOURCE (Princeton)OR2J1
Genetics Home Reference (NIH)OR2J1
Genomic and cartography
GoldenPath hg38 (UCSC)OR2J1  -     chr6:29100843-29101978 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2J1  -     6p22.1   [Description]    (hg19-Feb_2009)
GoldenPathOR2J1 - 6p22.1 [CytoView hg19]  OR2J1 - 6p22.1 [CytoView hg38]
ImmunoBaseENSG00000204702
genome Data Viewer NCBIOR2J1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001348294
RefSeq genomic (Entrez)NC_000006 NG_004683 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)OR2J1
Alternative Splicing GalleryENSG00000204702
Gene ExpressionOR2J1 [ NCBI-GEO ]   OR2J1 [ EBI - ARRAY_EXPRESS ]   OR2J1 [ SEEK ]   OR2J1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2J1 [ Firebrowse - Broad ]
GenevisibleExpression of OR2J1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)442185
GTEX Portal (Tissue expression)OR2J1
Human Protein AtlasENSG00000204702-OR2J1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZK6
Splice isoforms : SwissVarQ9GZK6
PhosPhoSitePlusQ9GZK6
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR2J1
Blocks (Seattle)OR2J1
SuperfamilyQ9GZK6
Human Protein Atlas [tissue]ENSG00000204702-OR2J1 [tissue]
Peptide AtlasQ9GZK6
IPIIPI00304218   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZK6
IntAct (EBI)Q9GZK6
BioGRIDOR2J1
STRING (EMBL)OR2J1
ZODIACOR2J1
Ontologies - Pathways
QuickGOQ9GZK6
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR2J1
Atlas of Cancer Signalling NetworkOR2J1
Wikipedia pathwaysOR2J1
Orthology - Evolution
OrthoDB442185
GeneTree (enSembl)ENSG00000204702
Phylogenetic Trees/Animal Genes : TreeFamOR2J1
HOGENOMQ9GZK6
Homologs : HomoloGeneOR2J1
Homology/Alignments : Family Browser (UCSC)OR2J1
Gene fusions - Rearrangements
Fusion : QuiverOR2J1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2J1 [hg38]
dbVarOR2J1
ClinVarOR2J1
MonarchOR2J1
1000_GenomesOR2J1 
Exome Variant ServerOR2J1
GNOMAD BrowserENSG00000204702
Varsome BrowserOR2J1
Genomic Variants (DGV)OR2J1 [DGVbeta]
DECIPHEROR2J1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2J1 
Mutations
ICGC Data PortalOR2J1 
TCGA Data PortalOR2J1 
Broad Tumor PortalOR2J1
OASIS PortalOR2J1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2J1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOR2J1
Mutations and Diseases : HGMDOR2J1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2J1
DgiDB (Drug Gene Interaction Database)OR2J1
DoCM (Curated mutations)OR2J1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2J1 (select a term)
intoGenOR2J1
Cancer3DOR2J1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR2J1
MedgenOR2J1
Genetic Testing Registry OR2J1
NextProtQ9GZK6 [Medical]
GENETestsOR2J1
Target ValidationOR2J1
Huge Navigator OR2J1 [HugePedia]
ClinGenOR2J1
Clinical trials, drugs, therapy
MyCancerGenomeOR2J1
Protein Interactions : CTD
Pharm GKB GenePA32176
Clinical trialOR2J1
Miscellaneous
canSAR (ICR)OR2J1 (select the gene name)
HarmonizomeOR2J1
DataMed IndexOR2J1
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2J1
EVEXOR2J1
GoPubMedOR2J1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:20:27 CET 2020
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