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OR2J2 (olfactory receptor family 2 subfamily J member 2)

Identity

Alias_namesolfactory receptor, family 2, subfamily J, member 2
Alias_symbol (synonym)OR6-8
hs6M1-6
dJ80I19.4
Other aliasOR6-19
OR6.3.8
ORL684
HGNC (Hugo) OR2J2
LocusID (NCBI) 26707
Atlas_Id 71261
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 29173534 and ends at 29174574 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2J2   8260
Cards
Entrez_Gene (NCBI)OR2J2  26707  olfactory receptor family 2 subfamily J member 2
AliasesOR6-19; OR6-8; OR6.3.8; ORL684; 
dJ80I19.4; hs6M1-6
GeneCards (Weizmann)OR2J2
Ensembl hg19 (Hinxton)ENSG00000204700 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204700 [Gene_View]  ENSG00000204700 [Sequence]  chr6:29173534-29174574 [Contig_View]  OR2J2 [Vega]
ICGC DataPortalENSG00000204700
TCGA cBioPortalOR2J2
AceView (NCBI)OR2J2
Genatlas (Paris)OR2J2
WikiGenes26707
SOURCE (Princeton)OR2J2
Genetics Home Reference (NIH)OR2J2
Genomic and cartography
GoldenPath hg38 (UCSC)OR2J2  -     chr6:29173534-29174574 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2J2  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblOR2J2 - 6p22.1 [CytoView hg19]  OR2J2 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIOR2J2 [Mapview hg19]  OR2J2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ459862 BC069121 BC108896 BC108897 BC108898
RefSeq transcript (Entrez)NM_030905
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)OR2J2
Cluster EST : UnigeneHs.163518 [ NCBI ]
CGAP (NCI)Hs.163518
Alternative Splicing GalleryENSG00000204700
Gene ExpressionOR2J2 [ NCBI-GEO ]   OR2J2 [ EBI - ARRAY_EXPRESS ]   OR2J2 [ SEEK ]   OR2J2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2J2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26707
GTEX Portal (Tissue expression)OR2J2
Human Protein AtlasENSG00000204700-OR2J2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO76002   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO76002  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO76002
Splice isoforms : SwissVarO76002
PhosPhoSitePlusO76002
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2J2
DMDM Disease mutations26707
Blocks (Seattle)OR2J2
SuperfamilyO76002
Human Protein Atlas [tissue]ENSG00000204700-OR2J2 [tissue]
Peptide AtlasO76002
HPRD17700
IPIIPI00008678   IPI00646517   
Protein Interaction databases
DIP (DOE-UCLA)O76002
IntAct (EBI)O76002
FunCoupENSG00000204700
BioGRIDOR2J2
STRING (EMBL)OR2J2
ZODIACOR2J2
Ontologies - Pathways
QuickGOO76002
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR2J2
Atlas of Cancer Signalling NetworkOR2J2
Wikipedia pathwaysOR2J2
Orthology - Evolution
OrthoDB26707
GeneTree (enSembl)ENSG00000204700
Phylogenetic Trees/Animal Genes : TreeFamOR2J2
HOVERGENO76002
HOGENOMO76002
Homologs : HomoloGeneOR2J2
Homology/Alignments : Family Browser (UCSC)OR2J2
Gene fusions - Rearrangements
Fusion : QuiverOR2J2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2J2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2J2
dbVarOR2J2
ClinVarOR2J2
1000_GenomesOR2J2 
Exome Variant ServerOR2J2
ExAC (Exome Aggregation Consortium)ENSG00000204700
GNOMAD BrowserENSG00000204700
Varsome BrowserOR2J2
Genetic variants : HAPMAP26707
Genomic Variants (DGV)OR2J2 [DGVbeta]
DECIPHEROR2J2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2J2 
Mutations
ICGC Data PortalOR2J2 
TCGA Data PortalOR2J2 
Broad Tumor PortalOR2J2
OASIS PortalOR2J2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2J2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2J2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2J2
DgiDB (Drug Gene Interaction Database)OR2J2
DoCM (Curated mutations)OR2J2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2J2 (select a term)
intoGenOR2J2
Cancer3DOR2J2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR2J2
MedgenOR2J2
Genetic Testing Registry OR2J2
NextProtO76002 [Medical]
TSGene26707
GENETestsOR2J2
Target ValidationOR2J2
Huge Navigator OR2J2 [HugePedia]
snp3D : Map Gene to Disease26707
BioCentury BCIQOR2J2
ClinGenOR2J2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26707
Chemical/Pharm GKB GenePA32177
Clinical trialOR2J2
Miscellaneous
canSAR (ICR)OR2J2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2J2
EVEXOR2J2
GoPubMedOR2J2
iHOPOR2J2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:21:30 CEST 2018

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