Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR2J3 (olfactory receptor family 2 subfamily J member 3)

Identity

Other alias6M1-3
C3HEXS
HS6M1-3
OR6-16
OR6-6
OR6.3.6
ORL671
HGNC (Hugo) OR2J3
LocusID (NCBI) 442186
Atlas_Id 56799
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 29111810 and ends at 29112884 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2J3   8261
Cards
Entrez_Gene (NCBI)OR2J3  442186  olfactory receptor family 2 subfamily J member 3
Aliases6M1-3; C3HEXS; HS6M1-3; OR6-16; 
OR6-6; OR6.3.6; ORL671
GeneCards (Weizmann)OR2J3
Ensembl hg19 (Hinxton)ENSG00000204701 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204701 [Gene_View]  ENSG00000204701 [Sequence]  chr6:29111810-29112884 [Contig_View]  OR2J3 [Vega]
ICGC DataPortalENSG00000204701
TCGA cBioPortalOR2J3
AceView (NCBI)OR2J3
Genatlas (Paris)OR2J3
WikiGenes442186
SOURCE (Princeton)OR2J3
Genetics Home Reference (NIH)OR2J3
Genomic and cartography
GoldenPath hg38 (UCSC)OR2J3  -     chr6:29111810-29112884 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2J3  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblOR2J3 - 6p22.1 [CytoView hg19]  OR2J3 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIOR2J3 [Mapview hg19]  OR2J3 [Mapview hg38]
OMIM615016   615082   
Gene and transcription
Genbank (Entrez)BC136973 BC136975
RefSeq transcript (Entrez)NM_001005216
RefSeq genomic (Entrez)NC_000006 NG_033252 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)OR2J3
Cluster EST : UnigeneHs.738947 [ NCBI ]
CGAP (NCI)Hs.738947
Alternative Splicing GalleryENSG00000204701
Gene ExpressionOR2J3 [ NCBI-GEO ]   OR2J3 [ EBI - ARRAY_EXPRESS ]   OR2J3 [ SEEK ]   OR2J3 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2J3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)442186
GTEX Portal (Tissue expression)OR2J3
Human Protein AtlasENSG00000204701-OR2J3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO76001   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO76001  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO76001
Splice isoforms : SwissVarO76001
PhosPhoSitePlusO76001
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR2J3
DMDM Disease mutations442186
Blocks (Seattle)OR2J3
SuperfamilyO76001
Human Protein Atlas [tissue]ENSG00000204701-OR2J3 [tissue]
Peptide AtlasO76001
IPIIPI00297629   IPI00747501   IPI00640211   IPI00893934   
Protein Interaction databases
DIP (DOE-UCLA)O76001
IntAct (EBI)O76001
FunCoupENSG00000204701
BioGRIDOR2J3
STRING (EMBL)OR2J3
ZODIACOR2J3
Ontologies - Pathways
QuickGOO76001
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2J3
Atlas of Cancer Signalling NetworkOR2J3
Wikipedia pathwaysOR2J3
Orthology - Evolution
OrthoDB442186
GeneTree (enSembl)ENSG00000204701
Phylogenetic Trees/Animal Genes : TreeFamOR2J3
HOVERGENO76001
HOGENOMO76001
Homologs : HomoloGeneOR2J3
Homology/Alignments : Family Browser (UCSC)OR2J3
Gene fusions - Rearrangements
Fusion : QuiverOR2J3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2J3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2J3
dbVarOR2J3
ClinVarOR2J3
1000_GenomesOR2J3 
Exome Variant ServerOR2J3
ExAC (Exome Aggregation Consortium)ENSG00000204701
GNOMAD BrowserENSG00000204701
Varsome BrowserOR2J3
Genetic variants : HAPMAP442186
Genomic Variants (DGV)OR2J3 [DGVbeta]
DECIPHEROR2J3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2J3 
Mutations
ICGC Data PortalOR2J3 
TCGA Data PortalOR2J3 
Broad Tumor PortalOR2J3
OASIS PortalOR2J3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2J3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2J3
BioMutasearch OR2J3
DgiDB (Drug Gene Interaction Database)OR2J3
DoCM (Curated mutations)OR2J3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2J3 (select a term)
intoGenOR2J3
Cancer3DOR2J3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615016    615082   
Orphanet
DisGeNETOR2J3
MedgenOR2J3
Genetic Testing Registry OR2J3
NextProtO76001 [Medical]
TSGene442186
GENETestsOR2J3
Target ValidationOR2J3
Huge Navigator OR2J3 [HugePedia]
snp3D : Map Gene to Disease442186
BioCentury BCIQOR2J3
ClinGenOR2J3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD442186
Chemical/Pharm GKB GenePA32178
Clinical trialOR2J3
Miscellaneous
canSAR (ICR)OR2J3 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2J3
EVEXOR2J3
GoPubMedOR2J3
iHOPOR2J3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:27:46 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.