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OR2L2 (olfactory receptor family 2 subfamily L member 2)

Identity

Alias_namesOR2L4P
OR2L12
olfactory receptor, family 2, subfamily L, member 2
Alias_symbol (synonym)HTPCRH07
HSHTPCRH07
Other aliasOR1-48
HGNC (Hugo) OR2L2
LocusID (NCBI) 26246
Atlas_Id 71266
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 248038172 and ends at 248039305 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2L2   8266
Cards
Entrez_Gene (NCBI)OR2L2  26246  olfactory receptor family 2 subfamily L member 2
AliasesHSHTPCRH07; HTPCRH07; OR1-48; OR2L12; 
OR2L4P
GeneCards (Weizmann)OR2L2
Ensembl hg19 (Hinxton)ENSG00000203663 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203663 [Gene_View]  chr1:248038172-248039305 [Contig_View]  OR2L2 [Vega]
ICGC DataPortalENSG00000203663
TCGA cBioPortalOR2L2
AceView (NCBI)OR2L2
Genatlas (Paris)OR2L2
WikiGenes26246
SOURCE (Princeton)OR2L2
Genetics Home Reference (NIH)OR2L2
Genomic and cartography
GoldenPath hg38 (UCSC)OR2L2  -     chr1:248038172-248039305 +  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2L2  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblOR2L2 - 1q44 [CytoView hg19]  OR2L2 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIOR2L2 [Mapview hg19]  OR2L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC104792 BC104794 X64978
RefSeq transcript (Entrez)NM_001004686
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR2L2
Cluster EST : UnigeneHs.684888 [ NCBI ]
CGAP (NCI)Hs.684888
Alternative Splicing GalleryENSG00000203663
Gene ExpressionOR2L2 [ NCBI-GEO ]   OR2L2 [ EBI - ARRAY_EXPRESS ]   OR2L2 [ SEEK ]   OR2L2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26246
GTEX Portal (Tissue expression)OR2L2
Human Protein AtlasENSG00000203663-OR2L2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH16   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH16  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH16
Splice isoforms : SwissVarQ8NH16
PhosPhoSitePlusQ8NH16
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2L2
DMDM Disease mutations26246
Blocks (Seattle)OR2L2
SuperfamilyQ8NH16
Human Protein Atlas [tissue]ENSG00000203663-OR2L2 [tissue]
Peptide AtlasQ8NH16
HPRD14942
IPIIPI00386364   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH16
IntAct (EBI)Q8NH16
FunCoupENSG00000203663
BioGRIDOR2L2
STRING (EMBL)OR2L2
ZODIACOR2L2
Ontologies - Pathways
QuickGOQ8NH16
Ontology : AmiGOmolecular_function  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  biological_process  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBImolecular_function  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  biological_process  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2L2
Atlas of Cancer Signalling NetworkOR2L2
Wikipedia pathwaysOR2L2
Orthology - Evolution
OrthoDB26246
GeneTree (enSembl)ENSG00000203663
Phylogenetic Trees/Animal Genes : TreeFamOR2L2
HOVERGENQ8NH16
HOGENOMQ8NH16
Homologs : HomoloGeneOR2L2
Homology/Alignments : Family Browser (UCSC)OR2L2
Gene fusions - Rearrangements
Tumor Fusion PortalOR2L2
Polymorphisos : RNX and Copy number variants
NCBI Variation ViewerOR2L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2L2
dbVarOR2L2
ClinVarOR2L2
1000_GenomesOR2L2 
Exome Variant ServerOR2L2
ExAC (Exome Aggregation Consortium)ENSG00000203663
GNOMAD BrowserENSG00000203663
Genetic variants : HAPMAP26246
Genomic Variants (DGV)OR2L2 [DGVbeta]
DECIPHEROR2L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2L2 
Mutations
ICGC Data PortalOR2L2 
TCGA Data PortalOR2L2 
Broad Tumor PortalOR2L2
OASIS PortalOR2L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2L2
DgiDB (Drug Gene Interaction Database)OR2L2
DoCM (Curated mutations)OR2L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2L2 (select a term)
intoGenOR2L2
Cancer3DOR2L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR2L2
MedgenOR2L2
Genetic Testing Registry OR2L2
NextProtQ8NH16 [Medical]
TSGene26246
GENETestsOR2L2
Target ValidationOR2L2
Huge Navigator OR2L2 [HugePedia]
snp3D : Map Gene to Disease26246
BioCentury BCIQOR2L2
ClinGenOR2L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26246
Chemical/Pharm GKB GenePA32183
Clinical trialOR2L2
Miscellaneous
canSAR (ICR)OR2L2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2L2
EVEXOR2L2
GoPubMedOR2L2
iHOPOR2L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:04:45 CET 2017

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