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OR2L3 (olfactory receptor family 2 subfamily L member 3)

Identity

Alias_namesolfactory receptor, family 2, subfamily L, member 3
Other alias-
HGNC (Hugo) OR2L3
LocusID (NCBI) 391192
Atlas_Id 71267
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 248060682 and ends at 248061620 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2L3   15009
Cards
Entrez_Gene (NCBI)OR2L3  391192  olfactory receptor family 2 subfamily L member 3
Aliases
GeneCards (Weizmann)OR2L3
Ensembl hg19 (Hinxton)ENSG00000198128 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198128 [Gene_View]  chr1:248060682-248061620 [Contig_View]  OR2L3 [Vega]
ICGC DataPortalENSG00000198128
TCGA cBioPortalOR2L3
AceView (NCBI)OR2L3
Genatlas (Paris)OR2L3
WikiGenes391192
SOURCE (Princeton)OR2L3
Genetics Home Reference (NIH)OR2L3
Genomic and cartography
GoldenPath hg38 (UCSC)OR2L3  -     chr1:248060682-248061620 +  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2L3  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblOR2L3 - 1q44 [CytoView hg19]  OR2L3 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIOR2L3 [Mapview hg19]  OR2L3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137039 BC137040
RefSeq transcript (Entrez)NM_001004687
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR2L3
Cluster EST : UnigeneHs.690412 [ NCBI ]
CGAP (NCI)Hs.690412
Alternative Splicing GalleryENSG00000198128
Gene ExpressionOR2L3 [ NCBI-GEO ]   OR2L3 [ EBI - ARRAY_EXPRESS ]   OR2L3 [ SEEK ]   OR2L3 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2L3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)391192
GTEX Portal (Tissue expression)OR2L3
Human Protein AtlasENSG00000198128-OR2L3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NG85   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NG85  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NG85
Splice isoforms : SwissVarQ8NG85
PhosPhoSitePlusQ8NG85
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2L3
DMDM Disease mutations391192
Blocks (Seattle)OR2L3
SuperfamilyQ8NG85
Human Protein Atlas [tissue]ENSG00000198128-OR2L3 [tissue]
Peptide AtlasQ8NG85
HPRD14943
IPIIPI00397100   
Protein Interaction databases
DIP (DOE-UCLA)Q8NG85
IntAct (EBI)Q8NG85
FunCoupENSG00000198128
BioGRIDOR2L3
STRING (EMBL)OR2L3
ZODIACOR2L3
Ontologies - Pathways
QuickGOQ8NG85
Ontology : AmiGOmolecular_function  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  biological_process  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBImolecular_function  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  biological_process  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2L3
Atlas of Cancer Signalling NetworkOR2L3
Wikipedia pathwaysOR2L3
Orthology - Evolution
OrthoDB391192
GeneTree (enSembl)ENSG00000198128
Phylogenetic Trees/Animal Genes : TreeFamOR2L3
HOVERGENQ8NG85
HOGENOMQ8NG85
Homologs : HomoloGeneOR2L3
Homology/Alignments : Family Browser (UCSC)OR2L3
Gene fusions - Rearrangements
Tumor Fusion PortalOR2L3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2L3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2L3
dbVarOR2L3
ClinVarOR2L3
1000_GenomesOR2L3 
Exome Variant ServerOR2L3
ExAC (Exome Aggregation Consortium)ENSG00000198128
GNOMAD BrowserENSG00000198128
Genetic variants : HAPMAP391192
Genomic Variants (DGV)OR2L3 [DGVbeta]
DECIPHEROR2L3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2L3 
Mutations
ICGC Data PortalOR2L3 
TCGA Data PortalOR2L3 
Broad Tumor PortalOR2L3
OASIS PortalOR2L3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2L3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2L3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2L3
DgiDB (Drug Gene Interaction Database)OR2L3
DoCM (Curated mutations)OR2L3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2L3 (select a term)
intoGenOR2L3
Cancer3DOR2L3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR2L3
MedgenOR2L3
Genetic Testing Registry OR2L3
NextProtQ8NG85 [Medical]
TSGene391192
GENETestsOR2L3
Target ValidationOR2L3
Huge Navigator OR2L3 [HugePedia]
snp3D : Map Gene to Disease391192
BioCentury BCIQOR2L3
ClinGenOR2L3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD391192
Chemical/Pharm GKB GenePA32184
Clinical trialOR2L3
Miscellaneous
canSAR (ICR)OR2L3 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2L3
EVEXOR2L3
GoPubMedOR2L3
iHOPOR2L3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:02:07 CET 2017

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