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OR2L5 (olfactory receptor, family 2, subfamily L, member 5)

Identity

Alias_namesOR2L11
OR2L5P
olfactory receptor, family 2, subfamily L, member 5
Other alias
HGNC (Hugo) OR2L5
LocusID (NCBI) 81466
Atlas_Id 71268
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 248185250 and ends at 248186188 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2L5   15011
Cards
Entrez_Gene (NCBI)OR2L5  81466  olfactory receptor, family 2, subfamily L, member 5
AliasesOR2L11; OR2L5P
GeneCards (Weizmann)OR2L5
Ensembl hg19 (Hinxton)ENSG00000197454 [Gene_View]  chr1:248185250-248186188 [Contig_View]  OR2L5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000197454 [Gene_View]  chr1:248185250-248186188 [Contig_View]  OR2L5 [Vega]
ICGC DataPortalENSG00000197454
TCGA cBioPortalOR2L5
AceView (NCBI)OR2L5
Genatlas (Paris)OR2L5
WikiGenes81466
SOURCE (Princeton)OR2L5
Genetics Home Reference (NIH)OR2L5
Genomic and cartography
GoldenPath hg19 (UCSC)OR2L5  -     chr1:248185250-248186188 +  1q44   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR2L5  -     1q44   [Description]    (hg38-Dec_2013)
EnsemblOR2L5 - 1q44 [CytoView hg19]  OR2L5 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIOR2L5 [Mapview hg19]  OR2L5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001258284
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_004275 NT_167186 NW_004929294
Consensus coding sequences : CCDS (NCBI)OR2L5
Cluster EST : UnigeneHs.742583 [ NCBI ]
CGAP (NCI)Hs.742583
Alternative Splicing GalleryENSG00000197454
Gene ExpressionOR2L5 [ NCBI-GEO ]   OR2L5 [ EBI - ARRAY_EXPRESS ]   OR2L5 [ SEEK ]   OR2L5 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2L5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81466
GTEX Portal (Tissue expression)OR2L5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NG80   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NG80  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NG80
Splice isoforms : SwissVarQ8NG80
PhosPhoSitePlusQ8NG80
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2L5
DMDM Disease mutations81466
Blocks (Seattle)OR2L5
SuperfamilyQ8NG80
Human Protein AtlasENSG00000197454
Peptide AtlasQ8NG80
IPIIPI00386283   
Protein Interaction databases
DIP (DOE-UCLA)Q8NG80
IntAct (EBI)Q8NG80
FunCoupENSG00000197454
BioGRIDOR2L5
STRING (EMBL)OR2L5
ZODIACOR2L5
Ontologies - Pathways
QuickGOQ8NG80
Ontology : AmiGOmolecular_function  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  biological_process  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBImolecular_function  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  biological_process  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2L5
Atlas of Cancer Signalling NetworkOR2L5
Wikipedia pathwaysOR2L5
Orthology - Evolution
OrthoDB81466
GeneTree (enSembl)ENSG00000197454
Phylogenetic Trees/Animal Genes : TreeFamOR2L5
HOVERGENQ8NG80
HOGENOMQ8NG80
Homologs : HomoloGeneOR2L5
Homology/Alignments : Family Browser (UCSC)OR2L5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2L5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2L5
dbVarOR2L5
ClinVarOR2L5
1000_GenomesOR2L5 
Exome Variant ServerOR2L5
ExAC (Exome Aggregation Consortium)OR2L5 (select the gene name)
Genetic variants : HAPMAP81466
Genomic Variants (DGV)OR2L5 [DGVbeta]
DECIPHER (Syndromes)1:248185250-248186188  ENSG00000197454
CONAN: Copy Number AnalysisOR2L5 
Mutations
ICGC Data PortalOR2L5 
TCGA Data PortalOR2L5 
Broad Tumor PortalOR2L5
OASIS PortalOR2L5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOR2L5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2L5
DgiDB (Drug Gene Interaction Database)OR2L5
DoCM (Curated mutations)OR2L5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2L5 (select a term)
intoGenOR2L5
Cancer3DOR2L5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR2L5
Genetic Testing Registry OR2L5
NextProtQ8NG80 [Medical]
TSGene81466
GENETestsOR2L5
Huge Navigator OR2L5 [HugePedia]
snp3D : Map Gene to Disease81466
BioCentury BCIQOR2L5
ClinGenOR2L5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81466
Chemical/Pharm GKB GenePA32186
Clinical trialOR2L5
Miscellaneous
canSAR (ICR)OR2L5 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2L5
EVEXOR2L5
GoPubMedOR2L5
iHOPOR2L5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:23 CET 2017

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