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OR2M4 (olfactory receptor family 2 subfamily M member 4)

Identity

Alias_namesolfactory receptor, family 2, subfamily M, member 4
Alias_symbol (synonym)HTPCRX18
TPCR100
HSHTPCRX18
OST710
Other aliasOR1-55
HGNC (Hugo) OR2M4
LocusID (NCBI) 26245
Atlas_Id 71273
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 248238929 and ends at 248239864 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2M4   8270
Cards
Entrez_Gene (NCBI)OR2M4  26245  olfactory receptor family 2 subfamily M member 4
AliasesHSHTPCRX18; HTPCRX18; OR1-55; OST710; 
TPCR100
GeneCards (Weizmann)OR2M4
Ensembl hg19 (Hinxton)ENSG00000171180 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171180 [Gene_View]  chr1:248238929-248239864 [Contig_View]  OR2M4 [Vega]
ICGC DataPortalENSG00000171180
TCGA cBioPortalOR2M4
AceView (NCBI)OR2M4
Genatlas (Paris)OR2M4
WikiGenes26245
SOURCE (Princeton)OR2M4
Genetics Home Reference (NIH)OR2M4
Genomic and cartography
GoldenPath hg38 (UCSC)OR2M4  -     chr1:248238929-248239864 +  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2M4  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblOR2M4 - 1q44 [CytoView hg19]  OR2M4 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIOR2M4 [Mapview hg19]  OR2M4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC141461 BC148718 X64992 X89666
RefSeq transcript (Entrez)NM_017504
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR2M4
Cluster EST : UnigeneHs.381309 [ NCBI ]
CGAP (NCI)Hs.381309
Alternative Splicing GalleryENSG00000171180
Gene ExpressionOR2M4 [ NCBI-GEO ]   OR2M4 [ EBI - ARRAY_EXPRESS ]   OR2M4 [ SEEK ]   OR2M4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2M4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26245
GTEX Portal (Tissue expression)OR2M4
Human Protein AtlasENSG00000171180-OR2M4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96R27   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96R27  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96R27
Splice isoforms : SwissVarQ96R27
PhosPhoSitePlusQ96R27
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)OR2M4
DMDM Disease mutations26245
Blocks (Seattle)OR2M4
SuperfamilyQ96R27
Human Protein Atlas [tissue]ENSG00000171180-OR2M4 [tissue]
Peptide AtlasQ96R27
HPRD14946
IPIIPI00168939   
Protein Interaction databases
DIP (DOE-UCLA)Q96R27
IntAct (EBI)Q96R27
FunCoupENSG00000171180
BioGRIDOR2M4
STRING (EMBL)OR2M4
ZODIACOR2M4
Ontologies - Pathways
QuickGOQ96R27
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  sensory perception of smell  integral component of membrane  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  sensory perception of smell  integral component of membrane  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2M4
Atlas of Cancer Signalling NetworkOR2M4
Wikipedia pathwaysOR2M4
Orthology - Evolution
OrthoDB26245
GeneTree (enSembl)ENSG00000171180
Phylogenetic Trees/Animal Genes : TreeFamOR2M4
HOVERGENQ96R27
HOGENOMQ96R27
Homologs : HomoloGeneOR2M4
Homology/Alignments : Family Browser (UCSC)OR2M4
Gene fusions - Rearrangements
Tumor Fusion PortalOR2M4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2M4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2M4
dbVarOR2M4
ClinVarOR2M4
1000_GenomesOR2M4 
Exome Variant ServerOR2M4
ExAC (Exome Aggregation Consortium)ENSG00000171180
GNOMAD BrowserENSG00000171180
Genetic variants : HAPMAP26245
Genomic Variants (DGV)OR2M4 [DGVbeta]
DECIPHEROR2M4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2M4 
Mutations
ICGC Data PortalOR2M4 
TCGA Data PortalOR2M4 
Broad Tumor PortalOR2M4
OASIS PortalOR2M4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2M4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2M4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2M4
DgiDB (Drug Gene Interaction Database)OR2M4
DoCM (Curated mutations)OR2M4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2M4 (select a term)
intoGenOR2M4
Cancer3DOR2M4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR2M4
MedgenOR2M4
Genetic Testing Registry OR2M4
NextProtQ96R27 [Medical]
TSGene26245
GENETestsOR2M4
Target ValidationOR2M4
Huge Navigator OR2M4 [HugePedia]
snp3D : Map Gene to Disease26245
BioCentury BCIQOR2M4
ClinGenOR2M4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26245
Chemical/Pharm GKB GenePA32194
Clinical trialOR2M4
Miscellaneous
canSAR (ICR)OR2M4 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2M4
EVEXOR2M4
GoPubMedOR2M4
iHOPOR2M4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:02:08 CET 2017

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