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OR2M4 (olfactory receptor family 2 subfamily M member 4)

Identity

Alias (NCBI)HSHTPCRX18
HTPCRX18
OR1-55
OST710
TPCR100
HGNC (Hugo) OR2M4
HGNC Alias symbHTPCRX18
TPCR100
HSHTPCRX18
OST710
HGNC Previous nameolfactory receptor, family 2, subfamily M, member 4
LocusID (NCBI) 26245
Atlas_Id 71273
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 248238929 and ends at 248239864 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)OR2M4   8270
Cards
Entrez_Gene (NCBI)OR2M4    olfactory receptor family 2 subfamily M member 4
AliasesHSHTPCRX18; HTPCRX18; OR1-55; OST710; 
TPCR100
GeneCards (Weizmann)OR2M4
Ensembl hg19 (Hinxton)ENSG00000171180 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171180 [Gene_View]  ENSG00000171180 [Sequence]  chr1:248238929-248239864 [Contig_View]  OR2M4 [Vega]
ICGC DataPortalENSG00000171180
TCGA cBioPortalOR2M4
AceView (NCBI)OR2M4
Genatlas (Paris)OR2M4
SOURCE (Princeton)OR2M4
Genetics Home Reference (NIH)OR2M4
Genomic and cartography
GoldenPath hg38 (UCSC)OR2M4  -     chr1:248238929-248239864 +  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2M4  -     1q44   [Description]    (hg19-Feb_2009)
GoldenPathOR2M4 - 1q44 [CytoView hg19]  OR2M4 - 1q44 [CytoView hg38]
ImmunoBaseENSG00000171180
Genome Data Viewer NCBIOR2M4 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)X64992 X89666
RefSeq transcript (Entrez)NM_017504
Consensus coding sequences : CCDS (NCBI)OR2M4
Gene ExpressionOR2M4 [ NCBI-GEO ]   OR2M4 [ EBI - ARRAY_EXPRESS ]   OR2M4 [ SEEK ]   OR2M4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2M4 [ Firebrowse - Broad ]
GenevisibleExpression of OR2M4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26245
GTEX Portal (Tissue expression)OR2M4
Human Protein AtlasENSG00000171180-OR2M4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96R27   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96R27  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96R27
PhosPhoSitePlusQ96R27
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)OR2M4
SuperfamilyQ96R27
AlphaFold pdb e-kbQ96R27   
Human Protein Atlas [tissue]ENSG00000171180-OR2M4 [tissue]
HPRD14946
Protein Interaction databases
DIP (DOE-UCLA)Q96R27
IntAct (EBI)Q96R27
BioGRIDOR2M4
STRING (EMBL)OR2M4
ZODIACOR2M4
Ontologies - Pathways
QuickGOQ96R27
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR2M4
Atlas of Cancer Signalling NetworkOR2M4
Wikipedia pathwaysOR2M4
Orthology - Evolution
OrthoDB26245
GeneTree (enSembl)ENSG00000171180
Phylogenetic Trees/Animal Genes : TreeFamOR2M4
Homologs : HomoloGeneOR2M4
Homology/Alignments : Family Browser (UCSC)OR2M4
Gene fusions - Rearrangements
Fusion : QuiverOR2M4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2M4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2M4
dbVarOR2M4
ClinVarOR2M4
MonarchOR2M4
1000_GenomesOR2M4 
Exome Variant ServerOR2M4
GNOMAD BrowserENSG00000171180
Varsome BrowserOR2M4
ACMGOR2M4 variants
VarityQ96R27
Genomic Variants (DGV)OR2M4 [DGVbeta]
DECIPHEROR2M4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2M4 
Mutations
ICGC Data PortalOR2M4 
TCGA Data PortalOR2M4 
Broad Tumor PortalOR2M4
OASIS PortalOR2M4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2M4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOR2M4
Mutations and Diseases : HGMDOR2M4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaOR2M4
DgiDB (Drug Gene Interaction Database)OR2M4
DoCM (Curated mutations)OR2M4
CIViC (Clinical Interpretations of Variants in Cancer)OR2M4
Cancer3DOR2M4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR2M4
MedgenOR2M4
Genetic Testing Registry OR2M4
NextProtQ96R27 [Medical]
GENETestsOR2M4
Target ValidationOR2M4
Huge Navigator OR2M4 [HugePedia]
ClinGenOR2M4
Clinical trials, drugs, therapy
MyCancerGenomeOR2M4
Protein Interactions : CTDOR2M4
Pharm GKB GenePA32194
PharosQ96R27
Clinical trialOR2M4
Miscellaneous
canSAR (ICR)OR2M4
HarmonizomeOR2M4
DataMed IndexOR2M4
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXOR2M4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:14:08 CEST 2021

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