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OR2M5 (olfactory receptor, family 2, subfamily M, member 5)

Identity

Alias_namesOR2M5P
olfactory receptor, family 2, subfamily M, member 5
Other alias
HGNC (Hugo) OR2M5
LocusID (NCBI) 127059
Atlas_Id 71274
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 248308450 and ends at 248309388 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2M5   19576
Cards
Entrez_Gene (NCBI)OR2M5  127059  olfactory receptor, family 2, subfamily M, member 5
AliasesOR2M5P
GeneCards (Weizmann)OR2M5
Ensembl hg19 (Hinxton)ENSG00000162727 [Gene_View]  chr1:248308450-248309388 [Contig_View]  OR2M5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000162727 [Gene_View]  chr1:248308450-248309388 [Contig_View]  OR2M5 [Vega]
ICGC DataPortalENSG00000162727
TCGA cBioPortalOR2M5
AceView (NCBI)OR2M5
Genatlas (Paris)OR2M5
WikiGenes127059
SOURCE (Princeton)OR2M5
Genetics Home Reference (NIH)OR2M5
Genomic and cartography
GoldenPath hg19 (UCSC)OR2M5  -     chr1:248308450-248309388 +  1q44   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR2M5  -     1q44   [Description]    (hg38-Dec_2013)
EnsemblOR2M5 - 1q44 [CytoView hg19]  OR2M5 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIOR2M5 [Mapview hg19]  OR2M5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004690
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_167186 NW_004929294
Consensus coding sequences : CCDS (NCBI)OR2M5
Cluster EST : UnigeneHs.553580 [ NCBI ]
CGAP (NCI)Hs.553580
Alternative Splicing GalleryENSG00000162727
Gene ExpressionOR2M5 [ NCBI-GEO ]   OR2M5 [ EBI - ARRAY_EXPRESS ]   OR2M5 [ SEEK ]   OR2M5 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2M5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127059
GTEX Portal (Tissue expression)OR2M5
Protein : pattern, domain, 3D structure
UniProt/SwissProtA3KFT3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA3KFT3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA3KFT3
Splice isoforms : SwissVarA3KFT3
PhosPhoSitePlusA3KFT3
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2M5
DMDM Disease mutations127059
Blocks (Seattle)OR2M5
SuperfamilyA3KFT3
Human Protein AtlasENSG00000162727
Peptide AtlasA3KFT3
HPRD14947
IPIIPI00183993   
Protein Interaction databases
DIP (DOE-UCLA)A3KFT3
IntAct (EBI)A3KFT3
FunCoupENSG00000162727
BioGRIDOR2M5
STRING (EMBL)OR2M5
ZODIACOR2M5
Ontologies - Pathways
QuickGOA3KFT3
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2M5
Atlas of Cancer Signalling NetworkOR2M5
Wikipedia pathwaysOR2M5
Orthology - Evolution
OrthoDB127059
GeneTree (enSembl)ENSG00000162727
Phylogenetic Trees/Animal Genes : TreeFamOR2M5
HOVERGENA3KFT3
HOGENOMA3KFT3
Homologs : HomoloGeneOR2M5
Homology/Alignments : Family Browser (UCSC)OR2M5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2M5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2M5
dbVarOR2M5
ClinVarOR2M5
1000_GenomesOR2M5 
Exome Variant ServerOR2M5
ExAC (Exome Aggregation Consortium)OR2M5 (select the gene name)
Genetic variants : HAPMAP127059
Genomic Variants (DGV)OR2M5 [DGVbeta]
DECIPHER (Syndromes)1:248308450-248309388  ENSG00000162727
CONAN: Copy Number AnalysisOR2M5 
Mutations
ICGC Data PortalOR2M5 
TCGA Data PortalOR2M5 
Broad Tumor PortalOR2M5
OASIS PortalOR2M5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2M5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2M5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2M5
DgiDB (Drug Gene Interaction Database)OR2M5
DoCM (Curated mutations)OR2M5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2M5 (select a term)
intoGenOR2M5
Cancer3DOR2M5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR2M5
Genetic Testing Registry OR2M5
NextProtA3KFT3 [Medical]
TSGene127059
GENETestsOR2M5
Huge Navigator OR2M5 [HugePedia]
snp3D : Map Gene to Disease127059
BioCentury BCIQOR2M5
ClinGenOR2M5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127059
Chemical/Pharm GKB GenePA134871998
Clinical trialOR2M5
Miscellaneous
canSAR (ICR)OR2M5 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2M5
EVEXOR2M5
GoPubMedOR2M5
iHOPOR2M5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:25 CET 2017

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