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OR2S2 (olfactory receptor family 2 subfamily S member 2 (gene/pseudogene))

Identity

Alias_namesolfactory receptor, family 2, subfamily S, member 2 (gene/pseudogene)
Other aliasOR37A
OST715
HGNC (Hugo) OR2S2
LocusID (NCBI) 56656
Atlas_Id 71276
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 35957108 and ends at 35958154 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2S2   8276
Cards
Entrez_Gene (NCBI)OR2S2  56656  olfactory receptor family 2 subfamily S member 2 (gene/pseudogene)
AliasesOR37A; OST715
GeneCards (Weizmann)OR2S2
Ensembl hg19 (Hinxton)ENSG00000122718 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122718 [Gene_View]  chr9:35957108-35958154 [Contig_View]  OR2S2 [Vega]
ICGC DataPortalENSG00000122718
TCGA cBioPortalOR2S2
AceView (NCBI)OR2S2
Genatlas (Paris)OR2S2
WikiGenes56656
SOURCE (Princeton)OR2S2
Genetics Home Reference (NIH)OR2S2
Genomic and cartography
GoldenPath hg38 (UCSC)OR2S2  -     chr9:35957108-35958154 -  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2S2  -     9p13.3   [Description]    (hg19-Feb_2009)
EnsemblOR2S2 - 9p13.3 [CytoView hg19]  OR2S2 - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIOR2S2 [Mapview hg19]  OR2S2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC104869 BC113651 HQ258184
RefSeq transcript (Entrez)NM_019897
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR2S2
Cluster EST : UnigeneHs.553540 [ NCBI ]
CGAP (NCI)Hs.553540
Alternative Splicing GalleryENSG00000122718
Gene ExpressionOR2S2 [ NCBI-GEO ]   OR2S2 [ EBI - ARRAY_EXPRESS ]   OR2S2 [ SEEK ]   OR2S2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2S2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56656
GTEX Portal (Tissue expression)OR2S2
Human Protein AtlasENSG00000122718-OR2S2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQN1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQN1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQN1
Splice isoforms : SwissVarQ9NQN1
PhosPhoSitePlusQ9NQN1
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2S2
DMDM Disease mutations56656
Blocks (Seattle)OR2S2
SuperfamilyQ9NQN1
Human Protein Atlas [tissue]ENSG00000122718-OR2S2 [tissue]
Peptide AtlasQ9NQN1
HPRD17704
IPIIPI00015852   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQN1
IntAct (EBI)Q9NQN1
FunCoupENSG00000122718
BioGRIDOR2S2
STRING (EMBL)OR2S2
ZODIACOR2S2
Ontologies - Pathways
QuickGOQ9NQN1
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  sensory perception of smell  integral component of membrane  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  sensory perception of smell  integral component of membrane  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2S2
Atlas of Cancer Signalling NetworkOR2S2
Wikipedia pathwaysOR2S2
Orthology - Evolution
OrthoDB56656
GeneTree (enSembl)ENSG00000122718
Phylogenetic Trees/Animal Genes : TreeFamOR2S2
HOVERGENQ9NQN1
HOGENOMQ9NQN1
Homologs : HomoloGeneOR2S2
Homology/Alignments : Family Browser (UCSC)OR2S2
Gene fusions - Rearrangements
Tumor Fusion PortalOR2S2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2S2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2S2
dbVarOR2S2
ClinVarOR2S2
1000_GenomesOR2S2 
Exome Variant ServerOR2S2
ExAC (Exome Aggregation Consortium)ENSG00000122718
GNOMAD BrowserENSG00000122718
Genetic variants : HAPMAP56656
Genomic Variants (DGV)OR2S2 [DGVbeta]
DECIPHEROR2S2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2S2 
Mutations
ICGC Data PortalOR2S2 
TCGA Data PortalOR2S2 
Broad Tumor PortalOR2S2
OASIS PortalOR2S2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2S2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2S2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2S2
DgiDB (Drug Gene Interaction Database)OR2S2
DoCM (Curated mutations)OR2S2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2S2 (select a term)
intoGenOR2S2
Cancer3DOR2S2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR2S2
MedgenOR2S2
Genetic Testing Registry OR2S2
NextProtQ9NQN1 [Medical]
TSGene56656
GENETestsOR2S2
Target ValidationOR2S2
Huge Navigator OR2S2 [HugePedia]
snp3D : Map Gene to Disease56656
BioCentury BCIQOR2S2
ClinGenOR2S2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56656
Chemical/Pharm GKB GenePA32200
Clinical trialOR2S2
Miscellaneous
canSAR (ICR)OR2S2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2S2
EVEXOR2S2
GoPubMedOR2S2
iHOPOR2S2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:20:28 CET 2017

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