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OR2T1 (olfactory receptor family 2 subfamily T member 1)

Identity

Alias_namesolfactory receptor, family 2, subfamily T, member 1
Alias_symbol (synonym)OR1-25
Other alias
HGNC (Hugo) OR2T1
LocusID (NCBI) 26696
Atlas_Id 71277
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 248405995 and ends at 248407104 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2T1   8277
Cards
Entrez_Gene (NCBI)OR2T1  26696  olfactory receptor family 2 subfamily T member 1
AliasesOR1-25
GeneCards (Weizmann)OR2T1
Ensembl hg19 (Hinxton)ENSG00000175143 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175143 [Gene_View]  chr1:248405995-248407104 [Contig_View]  OR2T1 [Vega]
ICGC DataPortalENSG00000175143
TCGA cBioPortalOR2T1
AceView (NCBI)OR2T1
Genatlas (Paris)OR2T1
WikiGenes26696
SOURCE (Princeton)OR2T1
Genetics Home Reference (NIH)OR2T1
Genomic and cartography
GoldenPath hg38 (UCSC)OR2T1  -     chr1:248405995-248407104 +  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2T1  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblOR2T1 - 1q44 [CytoView hg19]  OR2T1 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIOR2T1 [Mapview hg19]  OR2T1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC148403
RefSeq transcript (Entrez)NM_030904
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_051766 NT_187518 NT_187646
Consensus coding sequences : CCDS (NCBI)OR2T1
Cluster EST : UnigeneHs.626885 [ NCBI ]
CGAP (NCI)Hs.626885
Alternative Splicing GalleryENSG00000175143
Gene ExpressionOR2T1 [ NCBI-GEO ]   OR2T1 [ EBI - ARRAY_EXPRESS ]   OR2T1 [ SEEK ]   OR2T1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2T1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26696
GTEX Portal (Tissue expression)OR2T1
Human Protein AtlasENSG00000175143-OR2T1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43869   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43869  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43869
Splice isoforms : SwissVarO43869
PhosPhoSitePlusO43869
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2T1
DMDM Disease mutations26696
Blocks (Seattle)OR2T1
SuperfamilyO43869
Human Protein Atlas [tissue]ENSG00000175143-OR2T1 [tissue]
Peptide AtlasO43869
HPRD14949
IPIIPI00419372   
Protein Interaction databases
DIP (DOE-UCLA)O43869
IntAct (EBI)O43869
FunCoupENSG00000175143
BioGRIDOR2T1
STRING (EMBL)OR2T1
ZODIACOR2T1
Ontologies - Pathways
QuickGOO43869
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2T1
Atlas of Cancer Signalling NetworkOR2T1
Wikipedia pathwaysOR2T1
Orthology - Evolution
OrthoDB26696
GeneTree (enSembl)ENSG00000175143
Phylogenetic Trees/Animal Genes : TreeFamOR2T1
HOVERGENO43869
HOGENOMO43869
Homologs : HomoloGeneOR2T1
Homology/Alignments : Family Browser (UCSC)OR2T1
Gene fusions - Rearrangements
Tumor Fusion PortalOR2T1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2T1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2T1
dbVarOR2T1
ClinVarOR2T1
1000_GenomesOR2T1 
Exome Variant ServerOR2T1
ExAC (Exome Aggregation Consortium)ENSG00000175143
GNOMAD BrowserENSG00000175143
Genetic variants : HAPMAP26696
Genomic Variants (DGV)OR2T1 [DGVbeta]
DECIPHEROR2T1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2T1 
Mutations
ICGC Data PortalOR2T1 
TCGA Data PortalOR2T1 
Broad Tumor PortalOR2T1
OASIS PortalOR2T1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2T1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2T1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2T1
DgiDB (Drug Gene Interaction Database)OR2T1
DoCM (Curated mutations)OR2T1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2T1 (select a term)
intoGenOR2T1
Cancer3DOR2T1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR2T1
MedgenOR2T1
Genetic Testing Registry OR2T1
NextProtO43869 [Medical]
TSGene26696
GENETestsOR2T1
Target ValidationOR2T1
Huge Navigator OR2T1 [HugePedia]
snp3D : Map Gene to Disease26696
BioCentury BCIQOR2T1
ClinGenOR2T1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26696
Chemical/Pharm GKB GenePA32201
Clinical trialOR2T1
Miscellaneous
canSAR (ICR)OR2T1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2T1
EVEXOR2T1
GoPubMedOR2T1
iHOPOR2T1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:04:48 CET 2017

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