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OR2T11 (olfactory receptor family 2 subfamily T member 11 (gene/pseudogene))

Identity

Alias_namesolfactory receptor, family 2, subfamily T, member 11
olfactory receptor, family 2, subfamily T, member 11 (gene/pseudogene)
Alias_symbol (synonym)OR2T11Q
Other alias
HGNC (Hugo) OR2T11
LocusID (NCBI) 127077
Atlas_Id 71279
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 248626178 and ends at 248627128 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2T11   19574
Cards
Entrez_Gene (NCBI)OR2T11  127077  olfactory receptor family 2 subfamily T member 11 (gene/pseudogene)
AliasesOR2T11Q
GeneCards (Weizmann)OR2T11
Ensembl hg19 (Hinxton)ENSG00000183130 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183130 [Gene_View]  chr1:248626178-248627128 [Contig_View]  OR2T11 [Vega]
ICGC DataPortalENSG00000183130
TCGA cBioPortalOR2T11
AceView (NCBI)OR2T11
Genatlas (Paris)OR2T11
WikiGenes127077
SOURCE (Princeton)OR2T11
Genetics Home Reference (NIH)OR2T11
Genomic and cartography
GoldenPath hg38 (UCSC)OR2T11  -     chr1:248626178-248627128 -  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2T11  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblOR2T11 - 1q44 [CytoView hg19]  OR2T11 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIOR2T11 [Mapview hg19]  OR2T11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC140749
RefSeq transcript (Entrez)NM_001001964
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR2T11
Cluster EST : UnigeneHs.626619 [ NCBI ]
CGAP (NCI)Hs.626619
Alternative Splicing GalleryENSG00000183130
Gene ExpressionOR2T11 [ NCBI-GEO ]   OR2T11 [ EBI - ARRAY_EXPRESS ]   OR2T11 [ SEEK ]   OR2T11 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2T11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127077
GTEX Portal (Tissue expression)OR2T11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH01
Splice isoforms : SwissVarQ8NH01
PhosPhoSitePlusQ8NH01
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2T11
DMDM Disease mutations127077
Blocks (Seattle)OR2T11
SuperfamilyQ8NH01
Human Protein AtlasENSG00000183130
Peptide AtlasQ8NH01
HPRD17705
IPIIPI00450806   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH01
IntAct (EBI)Q8NH01
FunCoupENSG00000183130
BioGRIDOR2T11
STRING (EMBL)OR2T11
ZODIACOR2T11
Ontologies - Pathways
QuickGOQ8NH01
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2T11
Atlas of Cancer Signalling NetworkOR2T11
Wikipedia pathwaysOR2T11
Orthology - Evolution
OrthoDB127077
GeneTree (enSembl)ENSG00000183130
Phylogenetic Trees/Animal Genes : TreeFamOR2T11
HOVERGENQ8NH01
HOGENOMQ8NH01
Homologs : HomoloGeneOR2T11
Homology/Alignments : Family Browser (UCSC)OR2T11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2T11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2T11
dbVarOR2T11
ClinVarOR2T11
1000_GenomesOR2T11 
Exome Variant ServerOR2T11
ExAC (Exome Aggregation Consortium)OR2T11 (select the gene name)
Genetic variants : HAPMAP127077
Genomic Variants (DGV)OR2T11 [DGVbeta]
DECIPHEROR2T11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2T11 
Mutations
ICGC Data PortalOR2T11 
TCGA Data PortalOR2T11 
Broad Tumor PortalOR2T11
OASIS PortalOR2T11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2T11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2T11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2T11
DgiDB (Drug Gene Interaction Database)OR2T11
DoCM (Curated mutations)OR2T11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2T11 (select a term)
intoGenOR2T11
Cancer3DOR2T11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR2T11
Genetic Testing Registry OR2T11
NextProtQ8NH01 [Medical]
TSGene127077
GENETestsOR2T11
Target ValidationOR2T11
Huge Navigator OR2T11 [HugePedia]
snp3D : Map Gene to Disease127077
BioCentury BCIQOR2T11
ClinGenOR2T11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127077
Chemical/Pharm GKB GenePA134948800
Clinical trialOR2T11
Miscellaneous
canSAR (ICR)OR2T11 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2T11
EVEXOR2T11
GoPubMedOR2T11
iHOPOR2T11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:02 CEST 2017

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