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OR2T12 (olfactory receptor family 2 subfamily T member 12)

Identity

Alias_namesolfactory receptor, family 2, subfamily T, member 12
Other aliasOR1-57
HGNC (Hugo) OR2T12
LocusID (NCBI) 127064
Atlas_Id 71280
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 248294616 and ends at 248295578 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2T12   19592
Cards
Entrez_Gene (NCBI)OR2T12  127064  olfactory receptor family 2 subfamily T member 12
AliasesOR1-57
GeneCards (Weizmann)OR2T12
Ensembl hg19 (Hinxton)ENSG00000177201 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177201 [Gene_View]  chr1:248294616-248295578 [Contig_View]  OR2T12 [Vega]
ICGC DataPortalENSG00000177201
TCGA cBioPortalOR2T12
AceView (NCBI)OR2T12
Genatlas (Paris)OR2T12
WikiGenes127064
SOURCE (Princeton)OR2T12
Genetics Home Reference (NIH)OR2T12
Genomic and cartography
GoldenPath hg38 (UCSC)OR2T12  -     chr1:248294616-248295578 -  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2T12  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblOR2T12 - 1q44 [CytoView hg19]  OR2T12 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIOR2T12 [Mapview hg19]  OR2T12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004692
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR2T12
Cluster EST : UnigeneHs.553582 [ NCBI ]
CGAP (NCI)Hs.553582
Alternative Splicing GalleryENSG00000177201
Gene ExpressionOR2T12 [ NCBI-GEO ]   OR2T12 [ EBI - ARRAY_EXPRESS ]   OR2T12 [ SEEK ]   OR2T12 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2T12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127064
GTEX Portal (Tissue expression)OR2T12
Human Protein AtlasENSG00000177201-OR2T12 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NG77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NG77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NG77
Splice isoforms : SwissVarQ8NG77
PhosPhoSitePlusQ8NG77
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2T12
DMDM Disease mutations127064
Blocks (Seattle)OR2T12
SuperfamilyQ8NG77
Human Protein Atlas [tissue]ENSG00000177201-OR2T12 [tissue]
Peptide AtlasQ8NG77
HPRD14951
IPIIPI00168934   
Protein Interaction databases
DIP (DOE-UCLA)Q8NG77
IntAct (EBI)Q8NG77
FunCoupENSG00000177201
BioGRIDOR2T12
STRING (EMBL)OR2T12
ZODIACOR2T12
Ontologies - Pathways
QuickGOQ8NG77
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2T12
Atlas of Cancer Signalling NetworkOR2T12
Wikipedia pathwaysOR2T12
Orthology - Evolution
OrthoDB127064
GeneTree (enSembl)ENSG00000177201
Phylogenetic Trees/Animal Genes : TreeFamOR2T12
HOVERGENQ8NG77
HOGENOMQ8NG77
Homologs : HomoloGeneOR2T12
Homology/Alignments : Family Browser (UCSC)OR2T12
Gene fusions - Rearrangements
Fusion: Tumor Portal OR2T12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2T12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2T12
dbVarOR2T12
ClinVarOR2T12
1000_GenomesOR2T12 
Exome Variant ServerOR2T12
ExAC (Exome Aggregation Consortium)ENSG00000177201
GNOMAD BrowserENSG00000177201
Genetic variants : HAPMAP127064
Genomic Variants (DGV)OR2T12 [DGVbeta]
DECIPHEROR2T12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2T12 
Mutations
ICGC Data PortalOR2T12 
TCGA Data PortalOR2T12 
Broad Tumor PortalOR2T12
OASIS PortalOR2T12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2T12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2T12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2T12
DgiDB (Drug Gene Interaction Database)OR2T12
DoCM (Curated mutations)OR2T12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2T12 (select a term)
intoGenOR2T12
Cancer3DOR2T12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR2T12
Genetic Testing Registry OR2T12
NextProtQ8NG77 [Medical]
TSGene127064
GENETestsOR2T12
Target ValidationOR2T12
Huge Navigator OR2T12 [HugePedia]
snp3D : Map Gene to Disease127064
BioCentury BCIQOR2T12
ClinGenOR2T12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127064
Chemical/Pharm GKB GenePA134941840
Clinical trialOR2T12
Miscellaneous
canSAR (ICR)OR2T12 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2T12
EVEXOR2T12
GoPubMedOR2T12
iHOPOR2T12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:20:25 CET 2017

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