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OR2T2 (olfactory receptor family 2 subfamily T member 2)

Identity

Alias_namesOR2T2P
olfactory receptor, family 2, subfamily T, member 2 pseudogene
olfactory receptor, family 2, subfamily T, member 2
Other aliasOR1-43
HGNC (Hugo) OR2T2
LocusID (NCBI) 401992
Atlas_Id 71281
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 248452798 and ends at 248453772 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2T2   14725
Cards
Entrez_Gene (NCBI)OR2T2  401992  olfactory receptor family 2 subfamily T member 2
AliasesOR1-43; OR2T2P
GeneCards (Weizmann)OR2T2
Ensembl hg19 (Hinxton)ENSG00000196240 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196240 [Gene_View]  chr1:248452798-248453772 [Contig_View]  OR2T2 [Vega]
ICGC DataPortalENSG00000196240
TCGA cBioPortalOR2T2
AceView (NCBI)OR2T2
Genatlas (Paris)OR2T2
WikiGenes401992
SOURCE (Princeton)OR2T2
Genetics Home Reference (NIH)OR2T2
Genomic and cartography
GoldenPath hg38 (UCSC)OR2T2  -     chr1:248452798-248453772 +  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2T2  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblOR2T2 - 1q44 [CytoView hg19]  OR2T2 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIOR2T2 [Mapview hg19]  OR2T2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136961 BC136962
RefSeq transcript (Entrez)NM_001004136
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_187518 NT_187646
Consensus coding sequences : CCDS (NCBI)OR2T2
Cluster EST : UnigeneHs.554482 [ NCBI ]
CGAP (NCI)Hs.554482
Alternative Splicing GalleryENSG00000196240
Gene ExpressionOR2T2 [ NCBI-GEO ]   OR2T2 [ EBI - ARRAY_EXPRESS ]   OR2T2 [ SEEK ]   OR2T2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2T2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401992
GTEX Portal (Tissue expression)OR2T2
Human Protein AtlasENSG00000196240-OR2T2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IF00   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IF00  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IF00
Splice isoforms : SwissVarQ6IF00
PhosPhoSitePlusQ6IF00
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2T2
DMDM Disease mutations401992
Blocks (Seattle)OR2T2
SuperfamilyQ6IF00
Human Protein Atlas [tissue]ENSG00000196240-OR2T2 [tissue]
Peptide AtlasQ6IF00
HPRD17706
IPIIPI00465262   
Protein Interaction databases
DIP (DOE-UCLA)Q6IF00
IntAct (EBI)Q6IF00
FunCoupENSG00000196240
BioGRIDOR2T2
STRING (EMBL)OR2T2
ZODIACOR2T2
Ontologies - Pathways
QuickGOQ6IF00
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2T2
Atlas of Cancer Signalling NetworkOR2T2
Wikipedia pathwaysOR2T2
Orthology - Evolution
OrthoDB401992
GeneTree (enSembl)ENSG00000196240
Phylogenetic Trees/Animal Genes : TreeFamOR2T2
HOVERGENQ6IF00
HOGENOMQ6IF00
Homologs : HomoloGeneOR2T2
Homology/Alignments : Family Browser (UCSC)OR2T2
Gene fusions - Rearrangements
Tumor Fusion PortalOR2T2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2T2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2T2
dbVarOR2T2
ClinVarOR2T2
1000_GenomesOR2T2 
Exome Variant ServerOR2T2
ExAC (Exome Aggregation Consortium)ENSG00000196240
GNOMAD BrowserENSG00000196240
Genetic variants : HAPMAP401992
Genomic Variants (DGV)OR2T2 [DGVbeta]
DECIPHEROR2T2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2T2 
Mutations
ICGC Data PortalOR2T2 
TCGA Data PortalOR2T2 
Broad Tumor PortalOR2T2
OASIS PortalOR2T2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2T2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2T2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2T2
DgiDB (Drug Gene Interaction Database)OR2T2
DoCM (Curated mutations)OR2T2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2T2 (select a term)
intoGenOR2T2
Cancer3DOR2T2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR2T2
MedgenOR2T2
Genetic Testing Registry OR2T2
NextProtQ6IF00 [Medical]
TSGene401992
GENETestsOR2T2
Target ValidationOR2T2
Huge Navigator OR2T2 [HugePedia]
snp3D : Map Gene to Disease401992
BioCentury BCIQOR2T2
ClinGenOR2T2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401992
Chemical/Pharm GKB GenePA32202
Clinical trialOR2T2
Miscellaneous
canSAR (ICR)OR2T2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2T2
EVEXOR2T2
GoPubMedOR2T2
iHOPOR2T2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:02:10 CET 2017

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