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OR2T27 (olfactory receptor family 2 subfamily T member 27)

Identity

Alias_namesolfactory receptor, family 2, subfamily T, member 27
Other alias-
HGNC (Hugo) OR2T27
LocusID (NCBI) 403239
Atlas_Id 71282
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 248649931 and ends at 248650884 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OR2T27   31252
Cards
Entrez_Gene (NCBI)OR2T27  403239  olfactory receptor family 2 subfamily T member 27
Aliases
GeneCards (Weizmann)OR2T27
Ensembl hg19 (Hinxton)ENSG00000187701 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187701 [Gene_View]  chr1:248649931-248650884 [Contig_View]  OR2T27 [Vega]
ICGC DataPortalENSG00000187701
TCGA cBioPortalOR2T27
AceView (NCBI)OR2T27
Genatlas (Paris)OR2T27
WikiGenes403239
SOURCE (Princeton)OR2T27
Genetics Home Reference (NIH)OR2T27
Genomic and cartography
GoldenPath hg38 (UCSC)OR2T27  -     chr1:248649931-248650884 -  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2T27  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblOR2T27 - 1q44 [CytoView hg19]  OR2T27 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIOR2T27 [Mapview hg19]  OR2T27 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001001824
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR2T27
Cluster EST : UnigeneHs.553814 [ NCBI ]
CGAP (NCI)Hs.553814
Alternative Splicing GalleryENSG00000187701
Gene ExpressionOR2T27 [ NCBI-GEO ]   OR2T27 [ EBI - ARRAY_EXPRESS ]   OR2T27 [ SEEK ]   OR2T27 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2T27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)403239
GTEX Portal (Tissue expression)OR2T27
Human Protein AtlasENSG00000187701-OR2T27 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH04   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH04  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH04
Splice isoforms : SwissVarQ8NH04
PhosPhoSitePlusQ8NH04
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2T27
DMDM Disease mutations403239
Blocks (Seattle)OR2T27
SuperfamilyQ8NH04
Human Protein Atlas [tissue]ENSG00000187701-OR2T27 [tissue]
Peptide AtlasQ8NH04
HPRD14952
IPIIPI00414402   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH04
IntAct (EBI)Q8NH04
FunCoupENSG00000187701
BioGRIDOR2T27
STRING (EMBL)OR2T27
ZODIACOR2T27
Ontologies - Pathways
QuickGOQ8NH04
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR2T27
Atlas of Cancer Signalling NetworkOR2T27
Wikipedia pathwaysOR2T27
Orthology - Evolution
OrthoDB403239
GeneTree (enSembl)ENSG00000187701
Phylogenetic Trees/Animal Genes : TreeFamOR2T27
HOVERGENQ8NH04
HOGENOMQ8NH04
Homologs : HomoloGeneOR2T27
Homology/Alignments : Family Browser (UCSC)OR2T27
Gene fusions - Rearrangements
Fusion : QuiverOR2T27
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2T27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2T27
dbVarOR2T27
ClinVarOR2T27
1000_GenomesOR2T27 
Exome Variant ServerOR2T27
ExAC (Exome Aggregation Consortium)ENSG00000187701
GNOMAD BrowserENSG00000187701
Genetic variants : HAPMAP403239
Genomic Variants (DGV)OR2T27 [DGVbeta]
DECIPHEROR2T27 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2T27 
Mutations
ICGC Data PortalOR2T27 
TCGA Data PortalOR2T27 
Broad Tumor PortalOR2T27
OASIS PortalOR2T27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2T27  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2T27
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2T27
DgiDB (Drug Gene Interaction Database)OR2T27
DoCM (Curated mutations)OR2T27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2T27 (select a term)
intoGenOR2T27
Cancer3DOR2T27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR2T27
MedgenOR2T27
Genetic Testing Registry OR2T27
NextProtQ8NH04 [Medical]
TSGene403239
GENETestsOR2T27
Target ValidationOR2T27
Huge Navigator OR2T27 [HugePedia]
snp3D : Map Gene to Disease403239
BioCentury BCIQOR2T27
ClinGenOR2T27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD403239
Chemical/Pharm GKB GenePA134945560
Clinical trialOR2T27
Miscellaneous
canSAR (ICR)OR2T27 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2T27
EVEXOR2T27
GoPubMedOR2T27
iHOPOR2T27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:45:46 CET 2018
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