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OR2T3 (olfactory receptor family 2 subfamily T member 3)

Identity

Alias_namesolfactory receptor, family 2, subfamily T, member 3
Other alias-
HGNC (Hugo) OR2T3
LocusID (NCBI) 343173
Atlas_Id 71284
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 248473351 and ends at 248474307 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2T3   14727
Cards
Entrez_Gene (NCBI)OR2T3  343173  olfactory receptor family 2 subfamily T member 3
Aliases
GeneCards (Weizmann)OR2T3
Ensembl hg19 (Hinxton)ENSG00000196539 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196539 [Gene_View]  chr1:248473351-248474307 [Contig_View]  OR2T3 [Vega]
ICGC DataPortalENSG00000196539
TCGA cBioPortalOR2T3
AceView (NCBI)OR2T3
Genatlas (Paris)OR2T3
WikiGenes343173
SOURCE (Princeton)OR2T3
Genetics Home Reference (NIH)OR2T3
Genomic and cartography
GoldenPath hg38 (UCSC)OR2T3  -     chr1:248473351-248474307 +  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2T3  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblOR2T3 - 1q44 [CytoView hg19]  OR2T3 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIOR2T3 [Mapview hg19]  OR2T3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136915 BC136916
RefSeq transcript (Entrez)NM_001005495
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_187518 NT_187646
Consensus coding sequences : CCDS (NCBI)OR2T3
Cluster EST : UnigeneHs.554481 [ NCBI ]
CGAP (NCI)Hs.554481
Alternative Splicing GalleryENSG00000196539
Gene ExpressionOR2T3 [ NCBI-GEO ]   OR2T3 [ EBI - ARRAY_EXPRESS ]   OR2T3 [ SEEK ]   OR2T3 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2T3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)343173
GTEX Portal (Tissue expression)OR2T3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH03   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH03
Splice isoforms : SwissVarQ8NH03
PhosPhoSitePlusQ8NH03
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)OR2T3
DMDM Disease mutations343173
Blocks (Seattle)OR2T3
SuperfamilyQ8NH03
Human Protein AtlasENSG00000196539
Peptide AtlasQ8NH03
HPRD17708
IPIIPI00470602   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH03
IntAct (EBI)Q8NH03
FunCoupENSG00000196539
BioGRIDOR2T3
STRING (EMBL)OR2T3
ZODIACOR2T3
Ontologies - Pathways
QuickGOQ8NH03
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2T3
Atlas of Cancer Signalling NetworkOR2T3
Wikipedia pathwaysOR2T3
Orthology - Evolution
OrthoDB343173
GeneTree (enSembl)ENSG00000196539
Phylogenetic Trees/Animal Genes : TreeFamOR2T3
HOVERGENQ8NH03
HOGENOMQ8NH03
Homologs : HomoloGeneOR2T3
Homology/Alignments : Family Browser (UCSC)OR2T3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2T3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2T3
dbVarOR2T3
ClinVarOR2T3
1000_GenomesOR2T3 
Exome Variant ServerOR2T3
ExAC (Exome Aggregation Consortium)OR2T3 (select the gene name)
Genetic variants : HAPMAP343173
Genomic Variants (DGV)OR2T3 [DGVbeta]
DECIPHEROR2T3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2T3 
Mutations
ICGC Data PortalOR2T3 
TCGA Data PortalOR2T3 
Broad Tumor PortalOR2T3
OASIS PortalOR2T3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2T3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2T3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2T3
DgiDB (Drug Gene Interaction Database)OR2T3
DoCM (Curated mutations)OR2T3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2T3 (select a term)
intoGenOR2T3
Cancer3DOR2T3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Cuck†Inwtitute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR2T3
Genetic Testing Registry OR2T3
NextProtQ8NH03 [Medical]
TSGene343173
GENETestsOR2T3
Target ValidationOR2T3
Huge Navigator OR2T3 [HugePedia]
snp3D : Map Gene to Disease343173
BioCentury BCIQOR2T3
ClinGenOR2T3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD343173
Chemical/Pharm GKB GenePA32203
Clinical trialOR2T3
Miscellaneous
canSAR (ICR)OR2T3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2T3
EVEXOR2T3
GoPubMedOR2T3
iHOPOR2T3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:03 CEST 2017

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