Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR2T4 (olfactory receptor family 2 subfamily T member 4)

Identity

Alias_namesolfactory receptor, family 2, subfamily T, member 4
Alias_symbol (synonym)OR2T4Q
Other aliasOR1-60
HGNC (Hugo) OR2T4
LocusID (NCBI) 127074
Atlas_Id 71288
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 248361581 and ends at 248362627 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2T4   15016
Cards
Entrez_Gene (NCBI)OR2T4  127074  olfactory receptor family 2 subfamily T member 4
AliasesOR1-60; OR2T4Q
GeneCards (Weizmann)OR2T4
Ensembl hg19 (Hinxton)ENSG00000196944 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196944 [Gene_View]  chr1:248361581-248362627 [Contig_View]  OR2T4 [Vega]
ICGC DataPortalENSG00000196944
TCGA cBioPortalOR2T4
AceView (NCBI)OR2T4
Genatlas (Paris)OR2T4
WikiGenes127074
SOURCE (Princeton)OR2T4
Genetics Home Reference (NIH)OR2T4
Genomic and cartography
GoldenPath hg38 (UCSC)OR2T4  -     chr1:248361581-248362627 +  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2T4  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblOR2T4 - 1q44 [CytoView hg19]  OR2T4 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIOR2T4 [Mapview hg19]  OR2T4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004696
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_187518 NT_187646
Consensus coding sequences : CCDS (NCBI)OR2T4
Cluster EST : UnigeneHs.553586 [ NCBI ]
CGAP (NCI)Hs.553586
Alternative Splicing GalleryENSG00000196944
Gene ExpressionOR2T4 [ NCBI-GEO ]   OR2T4 [ EBI - ARRAY_EXPRESS ]   OR2T4 [ SEEK ]   OR2T4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2T4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127074
GTEX Portal (Tissue expression)OR2T4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH00   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH00  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH00
Splice isoforms : SwissVarQ8NH00
PhosPhoSitePlusQ8NH00
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2T4
DMDM Disease mutations127074
Blocks (Seattle)OR2T4
SuperfamilyQ8NH00
Human Protein AtlasENSG00000196944
Peptide AtlasQ8NH00
HPRD14955
IPIIPI00303587   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH00
IntAct (EBI)Q8NH00
FunCoupENSG00000196944
BioGRIDOR2T4
STRING (EMBL)OR2T4
ZODIACOR2T4
Ontologies - Pathways
QuickGOQ8NH00
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2T4
Atlas of Cancer Signalling NetworkOR2T4
Wikipedia pathwaysOR2T4
Orthology - Evolution
OrthoDB127074
GeneTree (enSembl)ENSG00000196944
Phylogenetic Trees/Animal Genes : TreeFamOR2T4
HOVERGENQ8NH00
HOGENOMQ8NH00
Homologs : HomoloGeneOR2T4
Homology/Alignments : Family Browser (UCSC)OR2T4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2T4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2T4
dbVarOR2T4
ClinVarOR2T4
1000_GenomesOR2T4 
Exome Variant ServerOR2T4
ExAC (Exome Aggregation Consortium)OR2T4 (select the gene name)
Genetic variants : HAPMAP127074
Genomic Variants (DGV)OR2T4 [DGVbeta]
DECIPHEROR2T4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2T4 
Mutations
ICGC Data PortalOR2T4 
TCGA Data PortalOR2T4 
Broad Tumor PortalOR2T4
OASIS PortalOR2T4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2T4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2T4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2T4
DgiDB (Drug Gene Interaction Database)OR2T4
DoCM (Curated mutations)OR2T4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2T4 (select a term)
intoGenOR2T4
Cancer3DOR2T4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR2T4
Genetic Testing Registry OR2T4
NextProtQ8NH00 [Medical]
TSGene127074
GENETestsOR2T4
Target ValidationOR2T4
Huge Navigator OR2T4 [HugePedia]
snp3D : Map Gene to Disease127074
BioCentury BCIQOR2T4
ClinGenOR2T4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127074
Chemical/Pharm GKB GenePA32204
Clinical trialOR2T4
Miscellaneous
canSAR (ICR)OR2T4 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2T4
EVEXOR2T4
GoPubMedOR2T4
iHOPOR2T4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:34:12 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.