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OR2T5 (olfactory receptor, family 2, subfamily T, member 5)

Identity

Alias_namesolfactory receptor, family 2, subfamily T, member 5
Other aliasOR1-62
HGNC (Hugo) OR2T5
LocusID (NCBI) 401993
Atlas_Id 71289
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 248651890 and ends at 248652837 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2T5   15017
Cards
Entrez_Gene (NCBI)OR2T5  401993  olfactory receptor, family 2, subfamily T, member 5
AliasesOR1-62
GeneCards (Weizmann)OR2T5
Ensembl hg19 (Hinxton)ENSG00000203661 [Gene_View]  chr1:248651890-248652837 [Contig_View]  OR2T5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000203661 [Gene_View]  chr1:248651890-248652837 [Contig_View]  OR2T5 [Vega]
ICGC DataPortalENSG00000203661
TCGA cBioPortalOR2T5
AceView (NCBI)OR2T5
Genatlas (Paris)OR2T5
WikiGenes401993
SOURCE (Princeton)OR2T5
Genetics Home Reference (NIH)OR2T5
Genomic and cartography
GoldenPath hg19 (UCSC)OR2T5  -     chr1:248651890-248652837 +  1q44   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR2T5  -     1q44   [Description]    (hg38-Dec_2013)
EnsemblOR2T5 - 1q44 [CytoView hg19]  OR2T5 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIOR2T5 [Mapview hg19]  OR2T5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC140747 BC140915
RefSeq transcript (Entrez)NM_001004697
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_167186 NT_187518 NT_187646 NW_004929294
Consensus coding sequences : CCDS (NCBI)OR2T5
Cluster EST : UnigeneHs.553808 [ NCBI ]
CGAP (NCI)Hs.553808
Alternative Splicing GalleryENSG00000203661
Gene ExpressionOR2T5 [ NCBI-GEO ]   OR2T5 [ EBI - ARRAY_EXPRESS ]   OR2T5 [ SEEK ]   OR2T5 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2T5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401993
GTEX Portal (Tissue expression)OR2T5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IEZ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IEZ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IEZ7
Splice isoforms : SwissVarQ6IEZ7
PhosPhoSitePlusQ6IEZ7
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2T5
DMDM Disease mutations401993
Blocks (Seattle)OR2T5
SuperfamilyQ6IEZ7
Human Protein AtlasENSG00000203661
Peptide AtlasQ6IEZ7
HPRD17710
IPIIPI00402264   
Protein Interaction databases
DIP (DOE-UCLA)Q6IEZ7
IntAct (EBI)Q6IEZ7
FunCoupENSG00000203661
BioGRIDOR2T5
STRING (EMBL)OR2T5
ZODIACOR2T5
Ontologies - Pathways
QuickGOQ6IEZ7
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2T5
Atlas of Cancer Signalling NetworkOR2T5
Wikipedia pathwaysOR2T5
Orthology - Evolution
OrthoDB401993
GeneTree (enSembl)ENSG00000203661
Phylogenetic Trees/Animal Genes : TreeFamOR2T5
HOVERGENQ6IEZ7
HOGENOMQ6IEZ7
Homologs : HomoloGeneOR2T5
Homology/Alignments : Family Browser (UCSC)OR2T5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2T5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2T5
dbVarOR2T5
ClinVarOR2T5
1000_GenomesOR2T5 
Exome Variant ServerOR2T5
ExAC (Exome Aggregation Consortium)OR2T5 (select the gene name)
Genetic variants : HAPMAP401993
Genomic Variants (DGV)OR2T5 [DGVbeta]
DECIPHER (Syndromes)1:248651890-248652837  ENSG00000203661
CONAN: Copy Number AnalysisOR2T5 
Mutations
ICGC Data PortalOR2T5 
TCGA Data PortalOR2T5 
Broad Tumor PortalOR2T5
OASIS PortalOR2T5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2T5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2T5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2T5
DgiDB (Drug Gene Interaction Database)OR2T5
DoCM (Curated mutations)OR2T5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2T5 (select a term)
intoGenOR2T5
Cancer3DOR2T5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR2T5
Genetic Testing Registry OR2T5
NextProtQ6IEZ7 [Medical]
TSGene401993
GENETestsOR2T5
Huge Navigator OR2T5 [HugePedia]
snp3D : Map Gene to Disease401993
BioCentury BCIQOR2T5
ClinGenOR2T5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401993
Chemical/Pharm GKB GenePA32205
Clinical trialOR2T5
Miscellaneous
canSAR (ICR)OR2T5 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2T5
EVEXOR2T5
GoPubMedOR2T5
iHOPOR2T5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:28 CET 2017

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