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OR2T6 (olfactory receptor family 2 subfamily T member 6)

Identity

Alias_namesOR2T6P
OR2T9
olfactory receptor, family 2, subfamily T, member 6
Alias_symbol (synonym)OST703
Other alias
HGNC (Hugo) OR2T6
LocusID (NCBI) 254879
Atlas_Id 71290
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 248387609 and ends at 248388535 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2T6   15018
Cards
Entrez_Gene (NCBI)OR2T6  254879  olfactory receptor family 2 subfamily T member 6
AliasesOR2T6P; OR2T9; OST703
GeneCards (Weizmann)OR2T6
Ensembl hg19 (Hinxton)ENSG00000198104 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198104 [Gene_View]  chr1:248387609-248388535 [Contig_View]  OR2T6 [Vega]
ICGC DataPortalENSG00000198104
TCGA cBioPortalOR2T6
AceView (NCBI)OR2T6
Genatlas (Paris)OR2T6
WikiGenes254879
SOURCE (Princeton)OR2T6
Genetics Home Reference (NIH)OR2T6
Genomic and cartography
GoldenPath hg38 (UCSC)OR2T6  -     chr1:248387609-248388535 +  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2T6  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblOR2T6 - 1q44 [CytoView hg19]  OR2T6 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIOR2T6 [Mapview hg19]  OR2T6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005471
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_187518 NT_187646
Consensus coding sequences : CCDS (NCBI)OR2T6
Cluster EST : UnigeneHs.626884 [ NCBI ]
CGAP (NCI)Hs.626884
Alternative Splicing GalleryENSG00000198104
Gene ExpressionOR2T6 [ NCBI-GEO ]   OR2T6 [ EBI - ARRAY_EXPRESS ]   OR2T6 [ SEEK ]   OR2T6 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2T6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254879
GTEX Portal (Tissue expression)OR2T6
Human Protein AtlasENSG00000198104-OR2T6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHC8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHC8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHC8
Splice isoforms : SwissVarQ8NHC8
PhosPhoSitePlusQ8NHC8
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2T6
DMDM Disease mutations254879
Blocks (Seattle)OR2T6
SuperfamilyQ8NHC8
Human Protein Atlas [tissue]ENSG00000198104-OR2T6 [tissue]
Peptide AtlasQ8NHC8
HPRD17711
IPIIPI00303891   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHC8
IntAct (EBI)Q8NHC8
FunCoupENSG00000198104
BioGRIDOR2T6
STRING (EMBL)OR2T6
ZODIACOR2T6
Ontologies - Pathways
QuickGOQ8NHC8
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2T6
Atlas of Cancer Signalling NetworkOR2T6
Wikipedia pathwaysOR2T6
Orthology - Evolution
OrthoDB254879
GeneTree (enSembl)ENSG00000198104
Phylogenetic Trees/Animal Genes : TreeFamOR2T6
HOVERGENQ8NHC8
HOGENOMQ8NHC8
Homologs : HomoloGeneOR2T6
Homology/Alignments : Family Browser (UCSC)OR2T6
Gene fusions - Rearrangements
Fusion: Tumor Portal OR2T6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2T6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2T6
dbVarOR2T6
ClinVarOR2T6
1000_GenomesOR2T6 
Exome Variant ServerOR2T6
ExAC (Exome Aggregation Consortium)ENSG00000198104
GNOMAD BrowserENSG00000198104
Genetic variants : HAPMAP254879
Genomic Variants (DGV)OR2T6 [DGVbeta]
DECIPHEROR2T6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2T6 
Mutations
ICGC Data PortalOR2T6 
TCGA Data PortalOR2T6 
Broad Tumor PortalOR2T6
OASIS PortalOR2T6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2T6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2T6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2T6
DgiDB (Drug Gene Interaction Database)OR2T6
DoCM (Curated mutations)OR2T6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2T6 (select a term)
intoGenOR2T6
Cancer3DOR2T6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR2T6
Genetic Testing Registry OR2T6
NextProtQ8NHC8 [Medical]
TSGene254879
GENETestsOR2T6
Target ValidationOR2T6
Huge Navigator OR2T6 [HugePedia]
snp3D : Map Gene to Disease254879
BioCentury BCIQOR2T6
ClinGenOR2T6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254879
Chemical/Pharm GKB GenePA32206
Clinical trialOR2T6
Miscellaneous
canSAR (ICR)OR2T6 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2T6
EVEXOR2T6
GoPubMedOR2T6
iHOPOR2T6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:20:27 CET 2017

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