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OR2T8 (olfactory receptor family 2 subfamily T member 8)

Identity

Alias_namesOR2T8P
olfactory receptor, family 2, subfamily T, member 8
Other alias
HGNC (Hugo) OR2T8
LocusID (NCBI) 343172
Atlas_Id 71291
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 247921018 and ends at 247921956 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TRIM58 (1q44) / OR2T8 (1q44)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2T8   15020
Cards
Entrez_Gene (NCBI)OR2T8  343172  olfactory receptor family 2 subfamily T member 8
AliasesOR2T8P
GeneCards (Weizmann)OR2T8
Ensembl hg19 (Hinxton)ENSG00000177462 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177462 [Gene_View]  chr1:247921018-247921956 [Contig_View]  OR2T8 [Vega]
ICGC DataPortalENSG00000177462
TCGA cBioPortalOR2T8
AceView (NCBI)OR2T8
Genatlas (Paris)OR2T8
WikiGenes343172
SOURCE (Princeton)OR2T8
Genetics Home Reference (NIH)OR2T8
Genomic and cartography
GoldenPath hg38 (UCSC)OR2T8  -     chr1:247921018-247921956 +  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2T8  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblOR2T8 - 1q44 [CytoView hg19]  OR2T8 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIOR2T8 [Mapview hg19]  OR2T8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005522
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR2T8
Cluster EST : UnigeneHs.521114 [ NCBI ]
CGAP (NCI)Hs.521114
Alternative Splicing GalleryENSG00000177462
Gene ExpressionOR2T8 [ NCBI-GEO ]   OR2T8 [ EBI - ARRAY_EXPRESS ]   OR2T8 [ SEEK ]   OR2T8 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2T8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)343172
GTEX Portal (Tissue expression)OR2T8
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NH00   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NH00  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NH00
Splice isoforms : SwissVarA6NH00
PhosPhoSitePlusA6NH00
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2T8
DMDM Disease mutations343172
Blocks (Seattle)OR2T8
SuperfamilyA6NH00
Human Protein AtlasENSG00000177462
Peptide AtlasA6NH00
HPRD17712
IPIIPI00457030   
Protein Interaction databases
DIP (DOE-UCLA)A6NH00
IntAct (EBI)A6NH00
FunCoupENSG00000177462
BioGRIDOR2T8
STRING (EMBL)OR2T8
ZODIACOR2T8
Ontologies - Pathways
QuickGOA6NH00
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2T8
Atlas of Cancer Signalling NetworkOR2T8
Wikipedia pathwaysOR2T8
Orthology - Evolution
OrthoDB343172
GeneTree (enSembl)ENSG00000177462
Phylogenetic Trees/Animal Genes : TreeFamOR2T8
HOVERGENA6NH00
HOGENOMA6NH00
Homologs : HomoloGeneOR2T8
Homology/Alignments : Family Browser (UCSC)OR2T8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2T8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2T8
dbVarOR2T8
ClinVarOR2T8
1000_GenomesOR2T8 
Exome Variant ServerOR2T8
ExAC (Exome Aggregation Consortium)OR2T8 (select the gene name)
Genetic variants : HAPMAP343172
Genomic Variants (DGV)OR2T8 [DGVbeta]
DECIPHEROR2T8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2T8 
Mutations
ICGC Data PortalOR2T8 
TCGA Data PortalOR2T8 
Broad Tumor PortalOR2T8
OASIS PortalOR2T8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2T8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2T8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2T8
DgiDB (Drug Gene Interaction Database)OR2T8
DoCM (Curated mutations)OR2T8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2T8 (select a term)
intoGenOR2T8
Cancer3DOR2T8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR2T8
Genetic Testing Registry OR2T8
NextProtA6NH00 [Medical]
TSGene343172
GENETestsOR2T8
Target ValidationOR2T8
Huge Navigator OR2T8 [HugePedia]
snp3D : Map Gene to Disease343172
BioCentury BCIQOR2T8
ClinGenOR2T8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD343172
Chemical/Pharm GKB GenePA32208
Clinical trialOR2T8
Miscellaneous
canSAR (ICR)OR2T8 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2T8
EVEXOR2T8
GoPubMedOR2T8
iHOPOR2T8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:04 CEST 2017

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