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OR2W1 (olfactory receptor family 2 subfamily W member 1)

Identity

Alias_namesolfactory receptor, family 2, subfamily W, member 1
Alias_symbol (synonym)hs6M1-15
Other alias
HGNC (Hugo) OR2W1
LocusID (NCBI) 26692
Atlas_Id 71294
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 29044213 and ends at 29045175 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2W1   8281
Cards
Entrez_Gene (NCBI)OR2W1  26692  olfactory receptor family 2 subfamily W member 1
Aliaseshs6M1-15
GeneCards (Weizmann)OR2W1
Ensembl hg19 (Hinxton)ENSG00000204704 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204704 [Gene_View]  ENSG00000204704 [Sequence]  chr6:29044213-29045175 [Contig_View]  OR2W1 [Vega]
ICGC DataPortalENSG00000204704
TCGA cBioPortalOR2W1
AceView (NCBI)OR2W1
Genatlas (Paris)OR2W1
WikiGenes26692
SOURCE (Princeton)OR2W1
Genetics Home Reference (NIH)OR2W1
Genomic and cartography
GoldenPath hg38 (UCSC)OR2W1  -     chr6:29044213-29045175 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR2W1  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblOR2W1 - 6p22.1 [CytoView hg19]  OR2W1 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIOR2W1 [Mapview hg19]  OR2W1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC103870 BC103871 BC103872
RefSeq transcript (Entrez)NM_030903
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)OR2W1
Cluster EST : UnigeneHs.553526 [ NCBI ]
CGAP (NCI)Hs.553526
Alternative Splicing GalleryENSG00000204704
Gene ExpressionOR2W1 [ NCBI-GEO ]   OR2W1 [ EBI - ARRAY_EXPRESS ]   OR2W1 [ SEEK ]   OR2W1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2W1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26692
GTEX Portal (Tissue expression)OR2W1
Human Protein AtlasENSG00000204704-OR2W1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3N9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3N9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3N9
Splice isoforms : SwissVarQ9Y3N9
PhosPhoSitePlusQ9Y3N9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2W1
DMDM Disease mutations26692
Blocks (Seattle)OR2W1
SuperfamilyQ9Y3N9
Human Protein Atlas [tissue]ENSG00000204704-OR2W1 [tissue]
Peptide AtlasQ9Y3N9
HPRD17713
IPIIPI00000124   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3N9
IntAct (EBI)Q9Y3N9
FunCoupENSG00000204704
BioGRIDOR2W1
STRING (EMBL)OR2W1
ZODIACOR2W1
Ontologies - Pathways
QuickGOQ9Y3N9
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR2W1
Atlas of Cancer Signalling NetworkOR2W1
Wikipedia pathwaysOR2W1
Orthology - Evolution
OrthoDB26692
GeneTree (enSembl)ENSG00000204704
Phylogenetic Trees/Animal Genes : TreeFamOR2W1
HOVERGENQ9Y3N9
HOGENOMQ9Y3N9
Homologs : HomoloGeneOR2W1
Homology/Alignments : Family Browser (UCSC)OR2W1
Gene fusions - Rearrangements
Fusion : QuiverOR2W1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2W1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2W1
dbVarOR2W1
ClinVarOR2W1
1000_GenomesOR2W1 
Exome Variant ServerOR2W1
ExAC (Exome Aggregation Consortium)ENSG00000204704
GNOMAD BrowserENSG00000204704
Varsome BrowserOR2W1
Genetic variants : HAPMAP26692
Genomic Variants (DGV)OR2W1 [DGVbeta]
DECIPHEROR2W1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR2W1 
Mutations
ICGC Data PortalOR2W1 
TCGA Data PortalOR2W1 
Broad Tumor PortalOR2W1
OASIS PortalOR2W1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2W1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2W1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2W1
DgiDB (Drug Gene Interaction Database)OR2W1
DoCM (Curated mutations)OR2W1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2W1 (select a term)
intoGenOR2W1
Cancer3DOR2W1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR2W1
MedgenOR2W1
Genetic Testing Registry OR2W1
NextProtQ9Y3N9 [Medical]
TSGene26692
GENETestsOR2W1
Target ValidationOR2W1
Huge Navigator OR2W1 [HugePedia]
snp3D : Map Gene to Disease26692
BioCentury BCIQOR2W1
ClinGenOR2W1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26692
Chemical/Pharm GKB GenePA32214
Clinical trialOR2W1
Miscellaneous
canSAR (ICR)OR2W1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2W1
EVEXOR2W1
GoPubMedOR2W1
iHOPOR2W1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:21:38 CEST 2018

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