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OR2Y1 (olfactory receptor, family 2, subfamily Y, member 1)

Identity

Alias_namesolfactory receptor, family 2, subfamily Y, member 1
Other aliasOR5-2
HGNC (Hugo) OR2Y1
LocusID (NCBI) 134083
Atlas_Id 71297
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 180166123 and ends at 180167058 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR2Y1   14837
Cards
Entrez_Gene (NCBI)OR2Y1  134083  olfactory receptor, family 2, subfamily Y, member 1
AliasesOR5-2
GeneCards (Weizmann)OR2Y1
Ensembl hg19 (Hinxton)ENSG00000174339 [Gene_View]  chr5:180166123-180167058 [Contig_View]  OR2Y1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000174339 [Gene_View]  chr5:180166123-180167058 [Contig_View]  OR2Y1 [Vega]
ICGC DataPortalENSG00000174339
TCGA cBioPortalOR2Y1
AceView (NCBI)OR2Y1
Genatlas (Paris)OR2Y1
WikiGenes134083
SOURCE (Princeton)OR2Y1
Genetics Home Reference (NIH)OR2Y1
Genomic and cartography
GoldenPath hg19 (UCSC)OR2Y1  -     chr5:180166123-180167058 -  5q35.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR2Y1  -     5q35.3   [Description]    (hg38-Dec_2013)
EnsemblOR2Y1 - 5q35.3 [CytoView hg19]  OR2Y1 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIOR2Y1 [Mapview hg19]  OR2Y1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC140756
RefSeq transcript (Entrez)NM_001001657
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)OR2Y1
Cluster EST : UnigeneHs.554719 [ NCBI ]
CGAP (NCI)Hs.554719
Alternative Splicing GalleryENSG00000174339
Gene ExpressionOR2Y1 [ NCBI-GEO ]   OR2Y1 [ EBI - ARRAY_EXPRESS ]   OR2Y1 [ SEEK ]   OR2Y1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR2Y1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)134083
GTEX Portal (Tissue expression)OR2Y1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGV0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGV0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGV0
Splice isoforms : SwissVarQ8NGV0
PhosPhoSitePlusQ8NGV0
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR2Y1
DMDM Disease mutations134083
Blocks (Seattle)OR2Y1
SuperfamilyQ8NGV0
Human Protein AtlasENSG00000174339
Peptide AtlasQ8NGV0
HPRD17716
IPIIPI00303670   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGV0
IntAct (EBI)Q8NGV0
FunCoupENSG00000174339
BioGRIDOR2Y1
STRING (EMBL)OR2Y1
ZODIACOR2Y1
Ontologies - Pathways
QuickGOQ8NGV0
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR2Y1
Atlas of Cancer Signalling NetworkOR2Y1
Wikipedia pathwaysOR2Y1
Orthology - Evolution
OrthoDB134083
GeneTree (enSembl)ENSG00000174339
Phylogenetic Trees/Animal Genes : TreeFamOR2Y1
HOVERGENQ8NGV0
HOGENOMQ8NGV0
Homologs : HomoloGeneOR2Y1
Homology/Alignments : Family Browser (UCSC)OR2Y1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR2Y1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR2Y1
dbVarOR2Y1
ClinVarOR2Y1
1000_GenomesOR2Y1 
Exome Variant ServerOR2Y1
ExAC (Exome Aggregation Consortium)OR2Y1 (select the gene name)
Genetic variants : HAPMAP134083
Genomic Variants (DGV)OR2Y1 [DGVbeta]
DECIPHER (Syndromes)5:180166123-180167058  ENSG00000174339
CONAN: Copy Number AnalysisOR2Y1 
Mutations
ICGC Data PortalOR2Y1 
TCGA Data PortalOR2Y1 
Broad Tumor PortalOR2Y1
OASIS PortalOR2Y1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR2Y1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR2Y1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR2Y1
DgiDB (Drug Gene Interaction Database)OR2Y1
DoCM (Curated mutations)OR2Y1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR2Y1 (select a term)
intoGenOR2Y1
Cancer3DOR2Y1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR2Y1
Genetic Testing Registry OR2Y1
NextProtQ8NGV0 [Medical]
TSGene134083
GENETestsOR2Y1
Huge Navigator OR2Y1 [HugePedia]
snp3D : Map Gene to Disease134083
BioCentury BCIQOR2Y1
ClinGenOR2Y1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD134083
Chemical/Pharm GKB GenePA32220
Clinical trialOR2Y1
Miscellaneous
canSAR (ICR)OR2Y1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR2Y1
EVEXOR2Y1
GoPubMedOR2Y1
iHOPOR2Y1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:30 CET 2017

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