Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR3A1 (olfactory receptor, family 3, subfamily A, member 1)

Identity

Alias_namesolfactory receptor, family 3, subfamily A, member 1
Alias_symbol (synonym)OLFRA03
OR40
OR17-40
Other aliasOR17-82
HGNC (Hugo) OR3A1
LocusID (NCBI) 4994
Atlas_Id 71299
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 3194929 and ends at 3195876 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR3A1   8282
Cards
Entrez_Gene (NCBI)OR3A1  4994  olfactory receptor, family 3, subfamily A, member 1
AliasesOLFRA03; OR17-40; OR17-82; OR40
GeneCards (Weizmann)OR3A1
Ensembl hg19 (Hinxton)ENSG00000180090 [Gene_View]  chr17:3194929-3195876 [Contig_View]  OR3A1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000180090 [Gene_View]  chr17:3194929-3195876 [Contig_View]  OR3A1 [Vega]
ICGC DataPortalENSG00000180090
TCGA cBioPortalOR3A1
AceView (NCBI)OR3A1
Genatlas (Paris)OR3A1
WikiGenes4994
SOURCE (Princeton)OR3A1
Genetics Home Reference (NIH)OR3A1
Genomic and cartography
GoldenPath hg19 (UCSC)OR3A1  -     chr17:3194929-3195876 -  17p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR3A1  -     17p13.3   [Description]    (hg38-Dec_2013)
EnsemblOR3A1 - 17p13.3 [CytoView hg19]  OR3A1 - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBIOR3A1 [Mapview hg19]  OR3A1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC069414 BC096187 BC096188 BC096189 BC096190
RefSeq transcript (Entrez)NM_002550
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)OR3A1
Cluster EST : UnigeneHs.647410 [ NCBI ]
CGAP (NCI)Hs.647410
Alternative Splicing GalleryENSG00000180090
Gene ExpressionOR3A1 [ NCBI-GEO ]   OR3A1 [ EBI - ARRAY_EXPRESS ]   OR3A1 [ SEEK ]   OR3A1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR3A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4994
GTEX Portal (Tissue expression)OR3A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47881   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP47881  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP47881
Splice isoforms : SwissVarP47881
PhosPhoSitePlusP47881
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR3A1
DMDM Disease mutations4994
Blocks (Seattle)OR3A1
SuperfamilyP47881
Human Protein AtlasENSG00000180090
Peptide AtlasP47881
HPRD10131
IPIIPI00026651   
Protein Interaction databases
DIP (DOE-UCLA)P47881
IntAct (EBI)P47881
FunCoupENSG00000180090
BioGRIDOR3A1
STRING (EMBL)OR3A1
ZODIACOR3A1
Ontologies - Pathways
QuickGOP47881
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR3A1
Atlas of Cancer Signalling NetworkOR3A1
Wikipedia pathwaysOR3A1
Orthology - Evolution
OrthoDB4994
GeneTree (enSembl)ENSG00000180090
Phylogenetic Trees/Animal Genes : TreeFamOR3A1
HOVERGENP47881
HOGENOMP47881
Homologs : HomoloGeneOR3A1
Homology/Alignments : Family Browser (UCSC)OR3A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR3A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR3A1
dbVarOR3A1
ClinVarOR3A1
1000_GenomesOR3A1 
Exome Variant ServerOR3A1
ExAC (Exome Aggregation Consortium)OR3A1 (select the gene name)
Genetic variants : HAPMAP4994
Genomic Variants (DGV)OR3A1 [DGVbeta]
DECIPHER (Syndromes)17:3194929-3195876  ENSG00000180090
CONAN: Copy Number AnalysisOR3A1 
Mutations
ICGC Data PortalOR3A1 
TCGA Data PortalOR3A1 
Broad Tumor PortalOR3A1
OASIS PortalOR3A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR3A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR3A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR3A1
DgiDB (Drug Gene Interaction Database)OR3A1
DoCM (Curated mutations)OR3A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR3A1 (select a term)
intoGenOR3A1
Cancer3DOR3A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR3A1
Genetic Testing Registry OR3A1
NextProtP47881 [Medical]
TSGene4994
GENETestsOR3A1
Huge Navigator OR3A1 [HugePedia]
snp3D : Map Gene to Disease4994
BioCentury BCIQOR3A1
ClinGenOR3A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4994
Chemical/Pharm GKB GenePA32223
Clinical trialOR3A1
Miscellaneous
canSAR (ICR)OR3A1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR3A1
EVEXOR3A1
GoPubMedOR3A1
iHOPOR3A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:36:30 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.