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OR3A2 (olfactory receptor family 3 subfamily A member 2)

Identity

Alias_namesolfactory receptor, family 3, subfamily A, member 2
Alias_symbol (synonym)OLFRA04
OR228
OR17-228
Other aliasOR17-14
HGNC (Hugo) OR3A2
LocusID (NCBI) 4995
Atlas_Id 71300
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 3277890 and ends at 3278974 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR3A2   8283
Cards
Entrez_Gene (NCBI)OR3A2  4995  olfactory receptor family 3 subfamily A member 2
AliasesOLFRA04; OR17-14; OR17-228; OR228
GeneCards (Weizmann)OR3A2
Ensembl hg19 (Hinxton)ENSG00000221882 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221882 [Gene_View]  chr17:3277890-3278974 [Contig_View]  OR3A2 [Vega]
ICGC DataPortalENSG00000221882
TCGA cBioPortalOR3A2
AceView (NCBI)OR3A2
Genatlas (Paris)OR3A2
WikiGenes4995
SOURCE (Princeton)OR3A2
Genetics Home Reference (NIH)OR3A2
Genomic and cartography
GoldenPath hg38 (UCSC)OR3A2  -     chr17:3277890-3278974 -  17p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR3A2  -     17p13.3   [Description]    (hg19-Feb_2009)
EnsemblOR3A2 - 17p13.3 [CytoView hg19]  OR3A2 - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBIOR3A2 [Mapview hg19]  OR3A2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC095517
RefSeq transcript (Entrez)NM_002551
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR3A2
Cluster EST : UnigeneHs.647414 [ NCBI ]
CGAP (NCI)Hs.647414
Alternative Splicing GalleryENSG00000221882
Gene ExpressionOR3A2 [ NCBI-GEO ]   OR3A2 [ EBI - ARRAY_EXPRESS ]   OR3A2 [ SEEK ]   OR3A2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR3A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4995
GTEX Portal (Tissue expression)OR3A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47893   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP47893  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP47893
Splice isoforms : SwissVarP47893
PhosPhoSitePlusP47893
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR3A2
DMDM Disease mutations4995
Blocks (Seattle)OR3A2
SuperfamilyP47893
Human Protein AtlasENSG00000221882
Peptide AtlasP47893
HPRD10132
IPIIPI00026661   
Protein Interaction databases
DIP (DOE-UCLA)P47893
IntAct (EBI)P47893
FunCoupENSG00000221882
BioGRIDOR3A2
STRING (EMBL)OR3A2
ZODIACOR3A2
Ontologies - Pathways
QuickGOP47893
Ontology : AmiGOreceptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  integral component of plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  sensory perception of chemical stimulus  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIreceptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  integral component of plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  sensory perception of chemical stimulus  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR3A2
Atlas of Cancer Signalling NetworkOR3A2
Wikipedia pathwaysOR3A2
Orthology - Evolution
OrthoDB4995
GeneTree (enSembl)ENSG00000221882
Phylogenetic Trees/Animal Genes : TreeFamOR3A2
HOVERGENP47893
HOGENOMP47893
Homologs : HomoloGeneOR3A2
Homology/Alignments : Family Browser (UCSC)OR3A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR3A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR3A2
dbVarOR3A2
ClinVarOR3A2
1000_GenomesOR3A2 
Exome Variant ServerOR3A2
ExAC (Exome Aggregation Consortium)OR3A2 (select the gene name)
Genetic variants : HAPMAP4995
Genomic Variants (DGV)OR3A2 [DGVbeta]
DECIPHEROR3A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR3A2 
Mutations
ICGC Data PortalOR3A2 
TCGA Data PortalOR3A2 
Broad Tumor PortalOR3A2
OASIS PortalOR3A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR3A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR3A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR3A2
DgiDB (Drug Gene Interaction Database)OR3A2
DoCM (Curated mutations)OR3A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR3A2 (select a term)
intoGenOR3A2
Cancer3DOR3A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR3A2
Genetic Testing Registry OR3A2
NextProtP47893 [Medical]
TSGene4995
GENETestsOR3A2
Target ValidationOR3A2
Huge Navigator OR3A2 [HugePedia]
snp3D : Map Gene to Disease4995
BioCentury BCIQOR3A2
ClinGenOR3A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4995
Chemical/Pharm GKB GenePA32224
Clinical trialOR3A2
Miscellaneous
canSAR (ICR)OR3A2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR3A2
EVEXOR3A2
GoPubMedOR3A2
iHOPOR3A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:05 CEST 2017

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