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OR3A4P (olfactory receptor, family 3, subfamily A, member 4 pseudogene)

Identity

Alias_namesOR3A4
olfactory receptor, family 3, subfamily A, member 4
olfactory receptor, family 3, subfamily A, member 4 pseudogene
Other aliasOLFRA05
OLFRA06
OR17-13
OR17-16
OR17-24
OR17-25
OR24
OR25
OR3A5P
HGNC (Hugo) OR3A4P
LocusID (NCBI) 390756
Atlas_Id 71302
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 3213539 and ends at 3214740 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR3A4P   15510
Cards
Entrez_Gene (NCBI)OR3A4P  390756  olfactory receptor, family 3, subfamily A, member 4 pseudogene
AliasesOLFRA05; OLFRA06; OR17-13; OR17-16; 
OR17-24; OR17-25; OR24; OR25; OR3A4; OR3A5P
GeneCards (Weizmann)OR3A4P
Ensembl hg19 (Hinxton)ENSG00000279517 [Gene_View]  chr17:3213539-3214740 [Contig_View]  OR3A4P [Vega]
Ensembl hg38 (Hinxton)ENSG00000279517 [Gene_View]  chr17:3213539-3214740 [Contig_View]  OR3A4P [Vega]
ICGC DataPortalENSG00000279517
TCGA cBioPortalOR3A4P
AceView (NCBI)OR3A4P
Genatlas (Paris)OR3A4P
WikiGenes390756
SOURCE (Princeton)OR3A4P
Genetics Home Reference (NIH)OR3A4P
Genomic and cartography
GoldenPath hg19 (UCSC)OR3A4P  -     chr17:3213539-3214740 +  17p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR3A4P  -     17p13.3   [Description]    (hg38-Dec_2013)
EnsemblOR3A4P - 17p13.3 [CytoView hg19]  OR3A4P - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBIOR3A4P [Mapview hg19]  OR3A4P [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136874 BC136875
RefSeq transcript (Entrez)NM_001005334
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)OR3A4P
Cluster EST : UnigeneHs.632245 [ NCBI ]
CGAP (NCI)Hs.632245
Alternative Splicing GalleryENSG00000279517
Gene ExpressionOR3A4P [ NCBI-GEO ]   OR3A4P [ EBI - ARRAY_EXPRESS ]   OR3A4P [ SEEK ]   OR3A4P [ MEM ]
Gene Expression Viewer (FireBrowse)OR3A4P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390756
GTEX Portal (Tissue expression)OR3A4P
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47883   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP47883  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP47883
Splice isoforms : SwissVarP47883
PhosPhoSitePlusP47883
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR3A4P
DMDM Disease mutations390756
Blocks (Seattle)OR3A4P
SuperfamilyP47883
Human Protein AtlasENSG00000279517
Peptide AtlasP47883
HPRD14957
Protein Interaction databases
DIP (DOE-UCLA)P47883
IntAct (EBI)P47883
FunCoupENSG00000279517
BioGRIDOR3A4P
STRING (EMBL)OR3A4P
ZODIACOR3A4P
Ontologies - Pathways
QuickGOP47883
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkOR3A4P
Atlas of Cancer Signalling NetworkOR3A4P
Wikipedia pathwaysOR3A4P
Orthology - Evolution
OrthoDB390756
GeneTree (enSembl)ENSG00000279517
Phylogenetic Trees/Animal Genes : TreeFamOR3A4P
HOVERGENP47883
HOGENOMP47883
Homologs : HomoloGeneOR3A4P
Homology/Alignments : Family Browser (UCSC)OR3A4P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR3A4P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR3A4P
dbVarOR3A4P
ClinVarOR3A4P
1000_GenomesOR3A4P 
Exome Variant ServerOR3A4P
ExAC (Exome Aggregation Consortium)OR3A4P (select the gene name)
Genetic variants : HAPMAP390756
Genomic Variants (DGV)OR3A4P [DGVbeta]
DECIPHER (Syndromes)17:3213539-3214740  ENSG00000279517
CONAN: Copy Number AnalysisOR3A4P 
Mutations
ICGC Data PortalOR3A4P 
TCGA Data PortalOR3A4P 
Broad Tumor PortalOR3A4P
OASIS PortalOR3A4P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOR3A4P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR3A4P
DgiDB (Drug Gene Interaction Database)OR3A4P
DoCM (Curated mutations)OR3A4P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR3A4P (select a term)
intoGenOR3A4P
Cancer3DOR3A4P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR3A4P
Genetic Testing Registry OR3A4P
NextProtP47883 [Medical]
TSGene390756
GENETestsOR3A4P
Huge Navigator OR3A4P [HugePedia]
snp3D : Map Gene to Disease390756
BioCentury BCIQOR3A4P
ClinGenOR3A4P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390756
Chemical/Pharm GKB GenePA32226
Clinical trialOR3A4P
Miscellaneous
canSAR (ICR)OR3A4P (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR3A4P
EVEXOR3A4P
GoPubMedOR3A4P
iHOPOR3A4P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:31 CET 2017

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