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OR4A16 (olfactory receptor family 4 subfamily A member 16)

Identity

Alias_namesolfactory receptor
Alias_symbol (synonym)OR4A16Q
Other aliasOR11-117
HGNC (Hugo) OR4A16
LocusID (NCBI) 81327
Atlas_Id 53762
Location 11q11  [Link to chromosome band 11q11]
Location_base_pair Starts at 55110677 and ends at 55111663 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4A16   15153
Cards
Entrez_Gene (NCBI)OR4A16  81327  olfactory receptor family 4 subfamily A member 16
AliasesOR11-117; OR4A16Q
GeneCards (Weizmann)OR4A16
Ensembl hg19 (Hinxton)ENSG00000181961 [Gene_View]  chr11:55110677-55111663 [Contig_View]  OR4A16 [Vega]
Ensembl hg38 (Hinxton)ENSG00000181961 [Gene_View]  chr11:55110677-55111663 [Contig_View]  OR4A16 [Vega]
ICGC DataPortalENSG00000181961
TCGA cBioPortalOR4A16
AceView (NCBI)OR4A16
Genatlas (Paris)OR4A16
WikiGenes81327
SOURCE (Princeton)OR4A16
Genetics Home Reference (NIH)OR4A16
Genomic and cartography
GoldenPath hg19 (UCSC)OR4A16  -     chr11:55110677-55111663 +  11q11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR4A16  -     11q11   [Description]    (hg38-Dec_2013)
EnsemblOR4A16 - 11q11 [CytoView hg19]  OR4A16 - 11q11 [CytoView hg38]
Mapping of homologs : NCBIOR4A16 [Mapview hg19]  OR4A16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC140748
RefSeq transcript (Entrez)NM_001005274
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)OR4A16
Cluster EST : UnigeneHs.554530 [ NCBI ]
CGAP (NCI)Hs.554530
Alternative Splicing GalleryENSG00000181961
Gene ExpressionOR4A16 [ NCBI-GEO ]   OR4A16 [ EBI - ARRAY_EXPRESS ]   OR4A16 [ SEEK ]   OR4A16 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4A16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81327
GTEX Portal (Tissue expression)OR4A16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH70   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH70  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH70
Splice isoforms : SwissVarQ8NH70
PhosPhoSitePlusQ8NH70
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4A16
DMDM Disease mutations81327
Blocks (Seattle)OR4A16
SuperfamilyQ8NH70
Human Protein AtlasENSG00000181961
Peptide AtlasQ8NH70
HPRD14959
IPIIPI00169181   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH70
IntAct (EBI)Q8NH70
FunCoupENSG00000181961
BioGRIDOR4A16
STRING (EMBL)OR4A16
ZODIACOR4A16
Ontologies - Pathways
QuickGOQ8NH70
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4A16
Atlas of Cancer Signalling NetworkOR4A16
Wikipedia pathwaysOR4A16
Orthology - Evolution
OrthoDB81327
GeneTree (enSembl)ENSG00000181961
Phylogenetic Trees/Animal Genes : TreeFamOR4A16
HOVERGENQ8NH70
HOGENOMQ8NH70
Homologs : HomoloGeneOR4A16
Homology/Alignments : Family Browser (UCSC)OR4A16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4A16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4A16
dbVarOR4A16
ClinVarOR4A16
1000_GenomesOR4A16 
Exome Variant ServerOR4A16
ExAC (Exome Aggregation Consortium)OR4A16 (select the gene name)
Genetic variants : HAPMAP81327
Genomic Variants (DGV)OR4A16 [DGVbeta]
DECIPHER (Syndromes)11:55110677-55111663  ENSG00000181961
CONAN: Copy Number AnalysisOR4A16 
Mutations
ICGC Data PortalOR4A16 
TCGA Data PortalOR4A16 
Broad Tumor PortalOR4A16
OASIS PortalOR4A16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4A16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4A16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4A16
DgiDB (Drug Gene Interaction Database)OR4A16
DoCM (Curated mutations)OR4A16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4A16 (select a term)
intoGenOR4A16
Cancer3DOR4A16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4A16
Genetic Testing Registry OR4A16
NextProtQ8NH70 [Medical]
TSGene81327
GENETestsOR4A16
Huge Navigator OR4A16 [HugePedia]
snp3D : Map Gene to Disease81327
BioCentury BCIQOR4A16
ClinGenOR4A16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81327
Chemical/Pharm GKB GenePA32235
Clinical trialOR4A16
Miscellaneous
canSAR (ICR)OR4A16 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4A16
EVEXOR4A16
GoPubMedOR4A16
iHOPOR4A16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:19:52 CET 2017

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