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OR4A47 (olfactory receptor family 4 subfamily A member 47)

Identity

Alias_namesolfactory receptor, family 4, subfamily A, member 47
Other aliasOR11-113
HGNC (Hugo) OR4A47
LocusID (NCBI) 403253
Atlas_Id 71304
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 48488793 and ends at 48489722 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4A47   31266
Cards
Entrez_Gene (NCBI)OR4A47  403253  olfactory receptor family 4 subfamily A member 47
AliasesOR11-113
GeneCards (Weizmann)OR4A47
Ensembl hg19 (Hinxton)ENSG00000237388 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237388 [Gene_View]  chr11:48488793-48489722 [Contig_View]  OR4A47 [Vega]
ICGC DataPortalENSG00000237388
TCGA cBioPortalOR4A47
AceView (NCBI)OR4A47
Genatlas (Paris)OR4A47
WikiGenes403253
SOURCE (Princeton)OR4A47
Genetics Home Reference (NIH)OR4A47
Genomic and cartography
GoldenPath hg38 (UCSC)OR4A47  -     chr11:48488793-48489722 +  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4A47  -     11p11.2   [Description]    (hg19-Feb_2009)
EnsemblOR4A47 - 11p11.2 [CytoView hg19]  OR4A47 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBIOR4A47 [Mapview hg19]  OR4A47 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC140738
RefSeq transcript (Entrez)NM_001005512
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4A47
Cluster EST : UnigeneHs.554532 [ NCBI ]
CGAP (NCI)Hs.554532
Alternative Splicing GalleryENSG00000237388
Gene ExpressionOR4A47 [ NCBI-GEO ]   OR4A47 [ EBI - ARRAY_EXPRESS ]   OR4A47 [ SEEK ]   OR4A47 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4A47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)403253
GTEX Portal (Tissue expression)OR4A47
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IF82   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IF82  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IF82
Splice isoforms : SwissVarQ6IF82
PhosPhoSitePlusQ6IF82
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4A47
DMDM Disease mutations403253
Blocks (Seattle)OR4A47
SuperfamilyQ6IF82
Human Protein AtlasENSG00000237388
Peptide AtlasQ6IF82
HPRD17718
IPIIPI00872614   
Protein Interaction databases
DIP (DOE-UCLA)Q6IF82
IntAct (EBI)Q6IF82
FunCoupENSG00000237388
BioGRIDOR4A47
STRING (EMBL)OR4A47
ZODIACOR4A47
Ontologies - Pathways
QuickGOQ6IF82
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4A47
Atlas of Cancer Signalling NetworkOR4A47
Wikipedia pathwaysOR4A47
Orthology - Evolution
OrthoDB403253
GeneTree (enSembl)ENSG00000237388
Phylogenetic Trees/Animal Genes : TreeFamOR4A47
HOVERGENQ6IF82
HOGENOMQ6IF82
Homologs : HomoloGeneOR4A47
Homology/Alignments : Family Browser (UCSC)OR4A47
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4A47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4A47
dbVarOR4A47
ClinVarOR4A47
1000_GenomesOR4A47 
Exome Variant ServerOR4A47
ExAC (Exome Aggregation Consortium)OR4A47 (select the gene name)
Genetic variants : HAPMAP403253
Genomic Variants (DGV)OR4A47 [DGVbeta]
DECIPHEROR4A47 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4A47 
Mutations
ICGC Data PortalOR4A47 
TCGA Data PortalOR4A47 
Broad Tumor PortalOR4A47
OASIS PortalOR4A47 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4A47  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4A47
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4A47
DgiDB (Drug Gene Interaction Database)OR4A47
DoCM (Curated mutations)OR4A47 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4A47 (select a term)
intoGenOR4A47
Cancer3DOR4A47(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4A47
Genetic Testing Registry OR4A47
NextProtQ6IF82 [Medical]
TSGene403253
GENETestsOR4A47
Huge Navigator OR4A47 [HugePedia]
snp3D : Map Gene to Disease403253
BioCentury BCIQOR4A47
ClinGenOR4A47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD403253
Chemical/Pharm GKB GenePA134952685
Clinical trialOR4A47
Miscellaneous
canSAR (ICR)OR4A47 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4A47
EVEXOR4A47
GoPubMedOR4A47
iHOPOR4A47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:46:31 CEST 2017

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