Atlas of Genetics and Cytogenetics in Oncology and Haematology

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OR4A5 (olfactory receptor family 4 subfamily A member 5)

Identity

Alias_namesolfactory receptor, family 4, subfamily A, member 5
Other aliasOR11-111
HGNC (Hugo) OR4A5
LocusID (NCBI) 81318
Atlas_Id 71305
Location 11q11  [Link to chromosome band 11q11]
Location_base_pair Starts at 54706832 and ends at 54707902 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OR4A5   15162
Cards
Entrez_Gene (NCBI)OR4A5  81318  olfactory receptor family 4 subfamily A member 5
AliasesOR11-111
GeneCards (Weizmann)OR4A5
Ensembl hg19 (Hinxton)ENSG00000221840 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221840 [Gene_View]  ENSG00000221840 [Sequence]  chr11:54706832-54707902 [Contig_View]  OR4A5 [Vega]
ICGC DataPortalENSG00000221840
TCGA cBioPortalOR4A5
AceView (NCBI)OR4A5
Genatlas (Paris)OR4A5
WikiGenes81318
SOURCE (Princeton)OR4A5
Genetics Home Reference (NIH)OR4A5
Genomic and cartography
GoldenPath hg38 (UCSC)OR4A5  -     chr11:54706832-54707902 +  11q11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4A5  -     11q11   [Description]    (hg19-Feb_2009)
EnsemblOR4A5 - 11q11 [CytoView hg19]  OR4A5 - 11q11 [CytoView hg38]
Mapping of homologs : NCBIOR4A5 [Mapview hg19]  OR4A5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC140750
RefSeq transcript (Entrez)NM_001005272
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4A5
Cluster EST : UnigeneHs.554531 [ NCBI ]
CGAP (NCI)Hs.554531
Alternative Splicing GalleryENSG00000221840
Gene ExpressionOR4A5 [ NCBI-GEO ]   OR4A5 [ EBI - ARRAY_EXPRESS ]   OR4A5 [ SEEK ]   OR4A5 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4A5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81318
GTEX Portal (Tissue expression)OR4A5
Human Protein AtlasENSG00000221840-OR4A5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH83   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH83  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH83
Splice isoforms : SwissVarQ8NH83
PhosPhoSitePlusQ8NH83
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4A5
DMDM Disease mutations81318
Blocks (Seattle)OR4A5
SuperfamilyQ8NH83
Human Protein Atlas [tissue]ENSG00000221840-OR4A5 [tissue]
Peptide AtlasQ8NH83
HPRD17719
IPIIPI00169205   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH83
IntAct (EBI)Q8NH83
FunCoupENSG00000221840
BioGRIDOR4A5
STRING (EMBL)OR4A5
ZODIACOR4A5
Ontologies - Pathways
QuickGOQ8NH83
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR4A5
Atlas of Cancer Signalling NetworkOR4A5
Wikipedia pathwaysOR4A5
Orthology - Evolution
OrthoDB81318
GeneTree (enSembl)ENSG00000221840
Phylogenetic Trees/Animal Genes : TreeFamOR4A5
HOGENOMQ8NH83
Homologs : HomoloGeneOR4A5
Homology/Alignments : Family Browser (UCSC)OR4A5
Gene fusions - Rearrangements
Fusion : QuiverOR4A5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4A5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4A5
dbVarOR4A5
ClinVarOR4A5
1000_GenomesOR4A5 
Exome Variant ServerOR4A5
ExAC (Exome Aggregation Consortium)ENSG00000221840
GNOMAD BrowserENSG00000221840
Varsome BrowserOR4A5
Genetic variants : HAPMAP81318
Genomic Variants (DGV)OR4A5 [DGVbeta]
DECIPHEROR4A5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4A5 
Mutations
ICGC Data PortalOR4A5 
TCGA Data PortalOR4A5 
Broad Tumor PortalOR4A5
OASIS PortalOR4A5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4A5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4A5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4A5
DgiDB (Drug Gene Interaction Database)OR4A5
DoCM (Curated mutations)OR4A5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4A5 (select a term)
intoGenOR4A5
Cancer3DOR4A5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR4A5
MedgenOR4A5
Genetic Testing Registry OR4A5
NextProtQ8NH83 [Medical]
TSGene81318
GENETestsOR4A5
Target ValidationOR4A5
Huge Navigator OR4A5 [HugePedia]
snp3D : Map Gene to Disease81318
BioCentury BCIQOR4A5
ClinGenOR4A5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81318
Chemical/Pharm GKB GenePA32245
Clinical trialOR4A5
Miscellaneous
canSAR (ICR)OR4A5 (select the gene name)
DataMed IndexOR4A5
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4A5
EVEXOR4A5
GoPubMedOR4A5
iHOPOR4A5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Feb 14 15:52:03 CET 2019
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