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OR4B1 (olfactory receptor family 4 subfamily B member 1)

Identity

Alias (NCBI)OR11-106
OST208
HGNC (Hugo) OR4B1
HGNC Alias symbOST208
HGNC Previous nameolfactory receptor, family 4, subfamily B, member 1
LocusID (NCBI) 119765
Atlas_Id 71306
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 48216810 and ends at 48217739 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)OR4B1   8290
Cards
Entrez_Gene (NCBI)OR4B1    olfactory receptor family 4 subfamily B member 1
AliasesOR11-106; OST208
GeneCards (Weizmann)OR4B1
Ensembl hg19 (Hinxton)ENSG00000175619 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175619 [Gene_View]  ENSG00000175619 [Sequence]  chr11:48216810-48217739 [Contig_View]  OR4B1 [Vega]
ICGC DataPortalENSG00000175619
TCGA cBioPortalOR4B1
AceView (NCBI)OR4B1
Genatlas (Paris)OR4B1
SOURCE (Princeton)OR4B1
Genetics Home Reference (NIH)OR4B1
Genomic and cartography
GoldenPath hg38 (UCSC)OR4B1  -     chr11:48216810-48217739 +  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4B1  -     11p11.2   [Description]    (hg19-Feb_2009)
GoldenPathOR4B1 - 11p11.2 [CytoView hg19]  OR4B1 - 11p11.2 [CytoView hg38]
ImmunoBaseENSG00000175619
genome Data Viewer NCBIOR4B1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005470
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4B1
Alternative Splicing GalleryENSG00000175619
Gene ExpressionOR4B1 [ NCBI-GEO ]   OR4B1 [ EBI - ARRAY_EXPRESS ]   OR4B1 [ SEEK ]   OR4B1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4B1 [ Firebrowse - Broad ]
GenevisibleExpression of OR4B1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119765
GTEX Portal (Tissue expression)OR4B1
Human Protein AtlasENSG00000175619-OR4B1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGF8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGF8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGF8
Splice isoforms : SwissVarQ8NGF8
PhosPhoSitePlusQ8NGF8
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR4B1
Blocks (Seattle)OR4B1
SuperfamilyQ8NGF8
Human Protein Atlas [tissue]ENSG00000175619-OR4B1 [tissue]
Peptide AtlasQ8NGF8
HPRD14960
IPIIPI00303394   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGF8
IntAct (EBI)Q8NGF8
BioGRIDOR4B1
STRING (EMBL)OR4B1
ZODIACOR4B1
Ontologies - Pathways
QuickGOQ8NGF8
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR4B1
Atlas of Cancer Signalling NetworkOR4B1
Wikipedia pathwaysOR4B1
Orthology - Evolution
OrthoDB119765
GeneTree (enSembl)ENSG00000175619
Phylogenetic Trees/Animal Genes : TreeFamOR4B1
HOGENOMQ8NGF8
Homologs : HomoloGeneOR4B1
Homology/Alignments : Family Browser (UCSC)OR4B1
Gene fusions - Rearrangements
Fusion : QuiverOR4B1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4B1 [hg38]
dbVarOR4B1
ClinVarOR4B1
MonarchOR4B1
1000_GenomesOR4B1 
Exome Variant ServerOR4B1
GNOMAD BrowserENSG00000175619
Varsome BrowserOR4B1
Genomic Variants (DGV)OR4B1 [DGVbeta]
DECIPHEROR4B1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4B1 
Mutations
ICGC Data PortalOR4B1 
TCGA Data PortalOR4B1 
Broad Tumor PortalOR4B1
OASIS PortalOR4B1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4B1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOR4B1
Mutations and Diseases : HGMDOR4B1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4B1
DgiDB (Drug Gene Interaction Database)OR4B1
DoCM (Curated mutations)OR4B1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4B1 (select a term)
intoGenOR4B1
Cancer3DOR4B1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR4B1
MedgenOR4B1
Genetic Testing Registry OR4B1
NextProtQ8NGF8 [Medical]
GENETestsOR4B1
Target ValidationOR4B1
Huge Navigator OR4B1 [HugePedia]
ClinGenOR4B1
Clinical trials, drugs, therapy
MyCancerGenomeOR4B1
Protein Interactions : CTD
Pharm GKB GenePA32250
Clinical trialOR4B1
Miscellaneous
canSAR (ICR)OR4B1 (select the gene name)
HarmonizomeOR4B1
DataMed IndexOR4B1
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4B1
EVEXOR4B1
GoPubMedOR4B1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:20:36 CET 2020

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