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OR4C11 (olfactory receptor family 4 subfamily C member 11)

Identity

Alias_namesOR4C11P
olfactory receptor, family 4, subfamily C, member 11
Other aliasOR11-136
HGNC (Hugo) OR4C11
LocusID (NCBI) 219429
Atlas_Id 71307
Location 11q11  [Link to chromosome band 11q11]
Location_base_pair Starts at 55603354 and ends at 55604398 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4C11   15167
Cards
Entrez_Gene (NCBI)OR4C11  219429  olfactory receptor family 4 subfamily C member 11
AliasesOR11-136; OR4C11P
GeneCards (Weizmann)OR4C11
Ensembl hg19 (Hinxton)ENSG00000172188 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172188 [Gene_View]  chr11:55603354-55604398 [Contig_View]  OR4C11 [Vega]
ICGC DataPortalENSG00000172188
TCGA cBioPortalOR4C11
AceView (NCBI)OR4C11
Genatlas (Paris)OR4C11
WikiGenes219429
SOURCE (Princeton)OR4C11
Genetics Home Reference (NIH)OR4C11
Genomic and cartography
GoldenPath hg38 (UCSC)OR4C11  -     chr11:55603354-55604398 -  11q11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4C11  -     11q11   [Description]    (hg19-Feb_2009)
EnsemblOR4C11 - 11q11 [CytoView hg19]  OR4C11 - 11q11 [CytoView hg38]
Mapping of homologs : NCBIOR4C11 [Mapview hg19]  OR4C11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC140727
RefSeq transcript (Entrez)NM_001004700
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4C11
Cluster EST : UnigeneHs.553620 [ NCBI ]
CGAP (NCI)Hs.553620
Alternative Splicing GalleryENSG00000172188
Gene ExpressionOR4C11 [ NCBI-GEO ]   OR4C11 [ EBI - ARRAY_EXPRESS ]   OR4C11 [ SEEK ]   OR4C11 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4C11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219429
GTEX Portal (Tissue expression)OR4C11
Human Protein AtlasENSG00000172188-OR4C11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IEV9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IEV9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IEV9
Splice isoforms : SwissVarQ6IEV9
PhosPhoSitePlusQ6IEV9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4C11
DMDM Disease mutations219429
Blocks (Seattle)OR4C11
SuperfamilyQ6IEV9
Human Protein Atlas [tissue]ENSG00000172188-OR4C11 [tissue]
Peptide AtlasQ6IEV9
HPRD14961
IPIIPI00419360   
Protein Interaction databases
DIP (DOE-UCLA)Q6IEV9
IntAct (EBI)Q6IEV9
FunCoupENSG00000172188
BioGRIDOR4C11
STRING (EMBL)OR4C11
ZODIACOR4C11
Ontologies - Pathways
QuickGOQ6IEV9
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4C11
Atlas of Cancer Signalling NetworkOR4C11
Wikipedia pathwaysOR4C11
Orthology - Evolution
OrthoDB219429
GeneTree (enSembl)ENSG00000172188
Phylogenetic Trees/Animal Genes : TreeFamOR4C11
HOVERGENQ6IEV9
HOGENOMQ6IEV9
Homologs : HomoloGeneOR4C11
Homology/Alignments : Family Browser (UCSC)OR4C11
Gene fusions - Rearrangements
Tumor Fusion PortalOR4C11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4C11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4C11
dbVarOR4C11
ClinVarOR4C11
1000_GenomesOR4C11 
Exome Variant ServerOR4C11
ExAC (Exome Aggregation Consortium)ENSG00000172188
GNOMAD BrowserENSG00000172188
Genetic variants : HAPMAP219429
Genomic Variants (DGV)OR4C11 [DGVbeta]
DECIPHEROR4C11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4C11 
Mutations
ICGC Data PortalOR4C11 
TCGA Data PortalOR4C11 
Broad Tumor PortalOR4C11
OASIS PortalOR4C11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4C11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4C11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4C11
DgiDB (Drug Gene Interaction Database)OR4C11
DoCM (Curated mutations)OR4C11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4C11 (select a term)
intoGenOR4C11
Cancer3DOR4C11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR4C11
MedgenOR4C11
Genetic Testing Registry OR4C11
NextProtQ6IEV9 [Medical]
TSGene219429
GENETestsOR4C11
Target ValidationOR4C11
Huge Navigator OR4C11 [HugePedia]
snp3D : Map Gene to Disease219429
BioCentury BCIQOR4C11
ClinGenOR4C11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219429
Chemical/Pharm GKB GenePA32253
Clinical trialOR4C11
Miscellaneous
canSAR (ICR)OR4C11 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4C11
EVEXOR4C11
GoPubMedOR4C11
iHOPOR4C11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:24:25 CET 2017

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