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OR4C12 (olfactory receptor, family 4, subfamily C, member 12)

Identity

Alias_namesolfactory receptor, family 4, subfamily C, member 12
Other aliasOR11-259
HGNC (Hugo) OR4C12
LocusID (NCBI) 283093
Atlas_Id 71308
Location 11p11.12  [Link to chromosome band 11p11]
Location_base_pair Starts at 50003009 and ends at 50004071 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4C12   15168
Cards
Entrez_Gene (NCBI)OR4C12  283093  olfactory receptor, family 4, subfamily C, member 12
AliasesOR11-259
GeneCards (Weizmann)OR4C12
Ensembl hg19 (Hinxton)ENSG00000221954 [Gene_View]  chr11:50003009-50004071 [Contig_View]  OR4C12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000221954 [Gene_View]  chr11:50003009-50004071 [Contig_View]  OR4C12 [Vega]
ICGC DataPortalENSG00000221954
TCGA cBioPortalOR4C12
AceView (NCBI)OR4C12
Genatlas (Paris)OR4C12
WikiGenes283093
SOURCE (Princeton)OR4C12
Genetics Home Reference (NIH)OR4C12
Genomic and cartography
GoldenPath hg19 (UCSC)OR4C12  -     chr11:50003009-50004071 -  11p11.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR4C12  -     11p11.12   [Description]    (hg38-Dec_2013)
EnsemblOR4C12 - 11p11.12 [CytoView hg19]  OR4C12 - 11p11.12 [CytoView hg38]
Mapping of homologs : NCBIOR4C12 [Mapview hg19]  OR4C12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136850 BC136851
RefSeq transcript (Entrez)NM_001005270
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)OR4C12
Cluster EST : UnigeneHs.553669 [ NCBI ]
CGAP (NCI)Hs.553669
Alternative Splicing GalleryENSG00000221954
Gene ExpressionOR4C12 [ NCBI-GEO ]   OR4C12 [ EBI - ARRAY_EXPRESS ]   OR4C12 [ SEEK ]   OR4C12 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4C12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283093
GTEX Portal (Tissue expression)OR4C12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96R67   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96R67  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96R67
Splice isoforms : SwissVarQ96R67
PhosPhoSitePlusQ96R67
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4C12
DMDM Disease mutations283093
Blocks (Seattle)OR4C12
SuperfamilyQ96R67
Human Protein AtlasENSG00000221954
Peptide AtlasQ96R67
HPRD14962
IPIIPI00913994   IPI00743405   
Protein Interaction databases
DIP (DOE-UCLA)Q96R67
IntAct (EBI)Q96R67
FunCoupENSG00000221954
BioGRIDOR4C12
STRING (EMBL)OR4C12
ZODIACOR4C12
Ontologies - Pathways
QuickGOQ96R67
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4C12
Atlas of Cancer Signalling NetworkOR4C12
Wikipedia pathwaysOR4C12
Orthology - Evolution
OrthoDB283093
GeneTree (enSembl)ENSG00000221954
Phylogenetic Trees/Animal Genes : TreeFamOR4C12
HOVERGENQ96R67
HOGENOMQ96R67
Homologs : HomoloGeneOR4C12
Homology/Alignments : Family Browser (UCSC)OR4C12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4C12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4C12
dbVarOR4C12
ClinVarOR4C12
1000_GenomesOR4C12 
Exome Variant ServerOR4C12
ExAC (Exome Aggregation Consortium)OR4C12 (select the gene name)
Genetic variants : HAPMAP283093
Genomic Variants (DGV)OR4C12 [DGVbeta]
DECIPHER (Syndromes)11:50003009-50004071  ENSG00000221954
CONAN: Copy Number AnalysisOR4C12 
Mutations
ICGC Data PortalOR4C12 
TCGA Data PortalOR4C12 
Broad Tumor PortalOR4C12
OASIS PortalOR4C12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4C12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4C12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4C12
DgiDB (Drug Gene Interaction Database)OR4C12
DoCM (Curated mutations)OR4C12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4C12 (select a term)
intoGenOR4C12
Cancer3DOR4C12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4C12
Genetic Testing Registry OR4C12
NextProtQ96R67 [Medical]
TSGene283093
GENETestsOR4C12
Huge Navigator OR4C12 [HugePedia]
snp3D : Map Gene to Disease283093
BioCentury BCIQOR4C12
ClinGenOR4C12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283093
Chemical/Pharm GKB GenePA32254
Clinical trialOR4C12
Miscellaneous
canSAR (ICR)OR4C12 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4C12
EVEXOR4C12
GoPubMedOR4C12
iHOPOR4C12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:32 CET 2017

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