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OR4C13 (olfactory receptor family 4 subfamily C member 13)

Identity

Alias_namesolfactory receptor, family 4, subfamily C, member 13
Other alias-
HGNC (Hugo) OR4C13
LocusID (NCBI) 283092
Atlas_Id 71309
Location 11p11.12  [Link to chromosome band 11p11]
Location_base_pair Starts at 49952391 and ends at 49953419 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4C13   15169
Cards
Entrez_Gene (NCBI)OR4C13  283092  olfactory receptor family 4 subfamily C member 13
Aliases
GeneCards (Weizmann)OR4C13
Ensembl hg19 (Hinxton)ENSG00000258817 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258817 [Gene_View]  chr11:49952391-49953419 [Contig_View]  OR4C13 [Vega]
ICGC DataPortalENSG00000258817
TCGA cBioPortalOR4C13
AceView (NCBI)OR4C13
Genatlas (Paris)OR4C13
WikiGenes283092
SOURCE (Princeton)OR4C13
Genetics Home Reference (NIH)OR4C13
Genomic and cartography
GoldenPath hg38 (UCSC)OR4C13  -     chr11:49952391-49953419 +  11p11.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4C13  -     11p11.12   [Description]    (hg19-Feb_2009)
EnsemblOR4C13 - 11p11.12 [CytoView hg19]  OR4C13 - 11p11.12 [CytoView hg38]
Mapping of homologs : NCBIOR4C13 [Mapview hg19]  OR4C13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137005
RefSeq transcript (Entrez)NM_001001955
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4C13
Cluster EST : UnigeneHs.553668 [ NCBI ]
CGAP (NCI)Hs.553668
Alternative Splicing GalleryENSG00000258817
Gene ExpressionOR4C13 [ NCBI-GEO ]   OR4C13 [ EBI - ARRAY_EXPRESS ]   OR4C13 [ SEEK ]   OR4C13 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4C13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283092
GTEX Portal (Tissue expression)OR4C13
Human Protein AtlasENSG00000258817-OR4C13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGP0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGP0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGP0
Splice isoforms : SwissVarQ8NGP0
PhosPhoSitePlusQ8NGP0
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4C13
DMDM Disease mutations283092
Blocks (Seattle)OR4C13
SuperfamilyQ8NGP0
Human Protein Atlas [tissue]ENSG00000258817-OR4C13 [tissue]
Peptide AtlasQ8NGP0
HPRD17720
IPIIPI00303576   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGP0
IntAct (EBI)Q8NGP0
FunCoupENSG00000258817
BioGRIDOR4C13
STRING (EMBL)OR4C13
ZODIACOR4C13
Ontologies - Pathways
QuickGOQ8NGP0
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4C13
Atlas of Cancer Signalling NetworkOR4C13
Wikipedia pathwaysOR4C13
Orthology - Evolution
OrthoDB283092
GeneTree (enSembl)ENSG00000258817
Phylogenetic Trees/Animal Genes : TreeFamOR4C13
HOVERGENQ8NGP0
HOGENOMQ8NGP0
Homologs : HomoloGeneOR4C13
Homology/Alignments : Family Browser (UCSC)OR4C13
Gene fusions - Rearrangements
Fusion: Tumor Portal OR4C13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4C13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4C13
dbVarOR4C13
ClinVarOR4C13
1000_GenomesOR4C13 
Exome Variant ServerOR4C13
ExAC (Exome Aggregation Consortium)ENSG00000258817
GNOMAD BrowserENSG00000258817
Genetic variants : HAPMAP283092
Genomic Variants (DGV)OR4C13 [DGVbeta]
DECIPHEROR4C13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4C13 
Mutations
ICGC Data PortalOR4C13 
TCGA Data PortalOR4C13 
Broad Tumor PortalOR4C13
OASIS PortalOR4C13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4C13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4C13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4C13
DgiDB (Drug Gene Interaction Database)OR4C13
DoCM (Curated mutations)OR4C13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4C13 (select a term)
intoGenOR4C13
Cancer3DOR4C13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4C13
Genetic Testing Registry OR4C13
NextProtQ8NGP0 [Medical]
TSGene283092
GENETestsOR4C13
Target ValidationOR4C13
Huge Navigator OR4C13 [HugePedia]
snp3D : Map Gene to Disease283092
BioCentury BCIQOR4C13
ClinGenOR4C13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283092
Chemical/Pharm GKB GenePA32255
Clinical trialOR4C13
Miscellaneous
canSAR (ICR)OR4C13 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4C13
EVEXOR4C13
GoPubMedOR4C13
iHOPOR4C13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:20:31 CET 2017

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