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OR4C15 (olfactory receptor, family 4, subfamily C, member 15)

Identity

Alias_namesolfactory receptor, family 4, subfamily C, member 15
Other aliasOR11-127
OR11-134
HGNC (Hugo) OR4C15
LocusID (NCBI) 81309
Atlas_Id 71310
Location 11q11  [Link to chromosome band 11q11]
Location_base_pair Starts at 55321783 and ends at 55322895 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4C15   15171
Cards
Entrez_Gene (NCBI)OR4C15  81309  olfactory receptor, family 4, subfamily C, member 15
AliasesOR11-127; OR11-134
GeneCards (Weizmann)OR4C15
Ensembl hg19 (Hinxton)ENSG00000181939 [Gene_View]  chr11:55321783-55322895 [Contig_View]  OR4C15 [Vega]
Ensembl hg38 (Hinxton)ENSG00000181939 [Gene_View]  chr11:55321783-55322895 [Contig_View]  OR4C15 [Vega]
ICGC DataPortalENSG00000181939
TCGA cBioPortalOR4C15
AceView (NCBI)OR4C15
Genatlas (Paris)OR4C15
WikiGenes81309
SOURCE (Princeton)OR4C15
Genetics Home Reference (NIH)OR4C15
Genomic and cartography
GoldenPath hg19 (UCSC)OR4C15  -     chr11:55321783-55322895 +  11q11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR4C15  -     11q11   [Description]    (hg38-Dec_2013)
EnsemblOR4C15 - 11q11 [CytoView hg19]  OR4C15 - 11q11 [CytoView hg38]
Mapping of homologs : NCBIOR4C15 [Mapview hg19]  OR4C15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001001920
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)OR4C15
Cluster EST : UnigeneHs.589003 [ NCBI ]
CGAP (NCI)Hs.589003
Alternative Splicing GalleryENSG00000181939
Gene ExpressionOR4C15 [ NCBI-GEO ]   OR4C15 [ EBI - ARRAY_EXPRESS ]   OR4C15 [ SEEK ]   OR4C15 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4C15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81309
GTEX Portal (Tissue expression)OR4C15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGM1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGM1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGM1
Splice isoforms : SwissVarQ8NGM1
PhosPhoSitePlusQ8NGM1
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4C15
DMDM Disease mutations81309
Blocks (Seattle)OR4C15
SuperfamilyQ8NGM1
Human Protein AtlasENSG00000181939
Peptide AtlasQ8NGM1
HPRD14963
IPIIPI00169059   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGM1
IntAct (EBI)Q8NGM1
FunCoupENSG00000181939
BioGRIDOR4C15
STRING (EMBL)OR4C15
ZODIACOR4C15
Ontologies - Pathways
QuickGOQ8NGM1
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4C15
Atlas of Cancer Signalling NetworkOR4C15
Wikipedia pathwaysOR4C15
Orthology - Evolution
OrthoDB81309
GeneTree (enSembl)ENSG00000181939
Phylogenetic Trees/Animal Genes : TreeFamOR4C15
HOVERGENQ8NGM1
HOGENOMQ8NGM1
Homologs : HomoloGeneOR4C15
Homology/Alignments : Family Browser (UCSC)OR4C15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4C15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4C15
dbVarOR4C15
ClinVarOR4C15
1000_GenomesOR4C15 
Exome Variant ServerOR4C15
ExAC (Exome Aggregation Consortium)OR4C15 (select the gene name)
Genetic variants : HAPMAP81309
Genomic Variants (DGV)OR4C15 [DGVbeta]
DECIPHER (Syndromes)11:55321783-55322895  ENSG00000181939
CONAN: Copy Number AnalysisOR4C15 
Mutations
ICGC Data PortalOR4C15 
TCGA Data PortalOR4C15 
Broad Tumor PortalOR4C15
OASIS PortalOR4C15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4C15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4C15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4C15
DgiDB (Drug Gene Interaction Database)OR4C15
DoCM (Curated mutations)OR4C15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4C15 (select a term)
intoGenOR4C15
Cancer3DOR4C15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4C15
Genetic Testing Registry OR4C15
NextProtQ8NGM1 [Medical]
TSGene81309
GENETestsOR4C15
Huge Navigator OR4C15 [HugePedia]
snp3D : Map Gene to Disease81309
BioCentury BCIQOR4C15
ClinGenOR4C15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81309
Chemical/Pharm GKB GenePA32257
Clinical trialOR4C15
Miscellaneous
canSAR (ICR)OR4C15 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4C15
EVEXOR4C15
GoPubMedOR4C15
iHOPOR4C15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:32 CET 2017

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