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OR4C16 (olfactory receptor family 4 subfamily C member 16 (gene/pseudogene))

Identity

Alias_namesolfactory receptor, family 4, subfamily C, member 16
olfactory receptor, family 4, subfamily C, member 16 (gene/pseudogene)
Other aliasOR11-135
HGNC (Hugo) OR4C16
LocusID (NCBI) 219428
Atlas_Id 71311
Location 11q11  [Link to chromosome band 11q11]
Location_base_pair Starts at 55572128 and ends at 55573060 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4C16   15172
Cards
Entrez_Gene (NCBI)OR4C16  219428  olfactory receptor family 4 subfamily C member 16 (gene/pseudogene)
AliasesOR11-135
GeneCards (Weizmann)OR4C16
Ensembl hg19 (Hinxton)ENSG00000181935 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181935 [Gene_View]  chr11:55572128-55573060 [Contig_View]  OR4C16 [Vega]
ICGC DataPortalENSG00000181935
TCGA cBioPortalOR4C16
AceView (NCBI)OR4C16
Genatlas (Paris)OR4C16
WikiGenes219428
SOURCE (Princeton)OR4C16
Genetics Home Reference (NIH)OR4C16
Genomic and cartography
GoldenPath hg38 (UCSC)OR4C16  -     chr11:55572128-55573060 +  11q11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4C16  -     11q11   [Description]    (hg19-Feb_2009)
EnsemblOR4C16 - 11q11 [CytoView hg19]  OR4C16 - 11q11 [CytoView hg38]
Mapping of homologs : NCBIOR4C16 [Mapview hg19]  OR4C16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004701
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4C16
Cluster EST : UnigeneHs.553619 [ NCBI ]
CGAP (NCI)Hs.553619
Alternative Splicing GalleryENSG00000181935
Gene ExpressionOR4C16 [ NCBI-GEO ]   OR4C16 [ EBI - ARRAY_EXPRESS ]   OR4C16 [ SEEK ]   OR4C16 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4C16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219428
GTEX Portal (Tissue expression)OR4C16
Human Protein AtlasENSG00000181935-OR4C16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGL9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGL9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGL9
Splice isoforms : SwissVarQ8NGL9
PhosPhoSitePlusQ8NGL9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4C16
DMDM Disease mutations219428
Blocks (Seattle)OR4C16
SuperfamilyQ8NGL9
Human Protein Atlas [tissue]ENSG00000181935-OR4C16 [tissue]
Peptide AtlasQ8NGL9
HPRD17721
IPIIPI00303515   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGL9
IntAct (EBI)Q8NGL9
FunCoupENSG00000181935
BioGRIDOR4C16
STRING (EMBL)OR4C16
ZODIACOR4C16
Ontologies - Pathways
QuickGOQ8NGL9
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4C16
Atlas of Cancer Signalling NetworkOR4C16
Wikipedia pathwaysOR4C16
Orthology - Evolution
OrthoDB219428
GeneTree (enSembl)ENSG00000181935
Phylogenetic Trees/Animal Genes : TreeFamOR4C16
HOVERGENQ8NGL9
HOGENOMQ8NGL9
Homologs : HomoloGeneOR4C16
Homology/Alignments : Family Browser (UCSC)OR4C16
Gene fusions - Rearrangements
Tumor Fusion PortalOR4C16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4C16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4C16
dbVarOR4C16
ClinVarOR4C16
1000_GenomesOR4C16 
Exome Variant ServerOR4C16
ExAC (Exome Aggregation Consortium)ENSG00000181935
GNOMAD BrowserENSG00000181935
Genetic variants : HAPMAP219428
Genomic Variants (DGV)OR4C16 [DGVbeta]
DECIPHEROR4C16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4C16 
Mutations
ICGC Data PortalOR4C16 
TCGA Data PortalOR4C16 
Broad Tumor PortalOR4C16
OASIS PortalOR4C16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4C16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4C16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4C16
DgiDB (Drug Gene Interaction Database)OR4C16
DoCM (Curated mutations)OR4C16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4C16 (select a term)
intoGenOR4C16
Cancer3DOR4C16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR4C16
MedgenOR4C16
Genetic Testing Registry OR4C16
NextProtQ8NGL9 [Medical]
TSGene219428
GENETestsOR4C16
Target ValidationOR4C16
Huge Navigator OR4C16 [HugePedia]
snp3D : Map Gene to Disease219428
BioCentury BCIQOR4C16
ClinGenOR4C16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219428
Chemical/Pharm GKB GenePA32258
Clinical trialOR4C16
Miscellaneous
canSAR (ICR)OR4C16 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4C16
EVEXOR4C16
GoPubMedOR4C16
iHOPOR4C16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:24:26 CET 2017

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