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OR4C3 (olfactory receptor family 4 subfamily C member 3)

Identity

Alias_namesolfactory receptor, family 4, subfamily C, member 3
Other aliasOR11-98
HGNC (Hugo) OR4C3
LocusID (NCBI) 256144
Atlas_Id 71313
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 48324941 and ends at 48325930 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4C3   14697
Cards
Entrez_Gene (NCBI)OR4C3  256144  olfactory receptor family 4 subfamily C member 3
AliasesOR11-98
GeneCards (Weizmann)OR4C3
Ensembl hg19 (Hinxton)ENSG00000176547 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176547 [Gene_View]  chr11:48324941-48325930 [Contig_View]  OR4C3 [Vega]
ICGC DataPortalENSG00000176547
TCGA cBioPortalOR4C3
AceView (NCBI)OR4C3
Genatlas (Paris)OR4C3
WikiGenes256144
SOURCE (Princeton)OR4C3
Genetics Home Reference (NIH)OR4C3
Genomic and cartography
GoldenPath hg38 (UCSC)OR4C3  -     chr11:48324941-48325930 +  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4C3  -     11p11.2   [Description]    (hg19-Feb_2009)
EnsemblOR4C3 - 11p11.2 [CytoView hg19]  OR4C3 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBIOR4C3 [Mapview hg19]  OR4C3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136853 BC136854
RefSeq transcript (Entrez)NM_001004702
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4C3
Cluster EST : UnigeneHs.553656 [ NCBI ]
CGAP (NCI)Hs.553656
Alternative Splicing GalleryENSG00000176547
Gene ExpressionOR4C3 [ NCBI-GEO ]   OR4C3 [ EBI - ARRAY_EXPRESS ]   OR4C3 [ SEEK ]   OR4C3 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4C3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256144
GTEX Portal (Tissue expression)OR4C3
Human Protein AtlasENSG00000176547-OR4C3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH37   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH37  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH37
Splice isoforms : SwissVarQ8NH37
PhosPhoSitePlusQ8NH37
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4C3
DMDM Disease mutations256144
Blocks (Seattle)OR4C3
SuperfamilyQ8NH37
Human Protein Atlas [tissue]ENSG00000176547-OR4C3 [tissue]
Peptide AtlasQ8NH37
HPRD17722
IPIIPI00871156   IPI00169131   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH37
IntAct (EBI)Q8NH37
FunCoupENSG00000176547
BioGRIDOR4C3
STRING (EMBL)OR4C3
ZODIACOR4C3
Ontologies - Pathways
QuickGOQ8NH37
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4C3
Atlas of Cancer Signalling NetworkOR4C3
Wikipedia pathwaysOR4C3
Orthology - Evolution
OrthoDB256144
GeneTree (enSembl)ENSG00000176547
Phylogenetic Trees/Animal Genes : TreeFamOR4C3
HOVERGENQ8NH37
HOGENOMQ8NH37
Homologs : HomoloGeneOR4C3
Homology/Alignments : Family Browser (UCSC)OR4C3
Gene fusions - Rearrangements
Tumor Fusion PortalOR4C3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4C3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4C3
dbVarOR4C3
ClinVarOR4C3
1000_GenomesOR4C3 
Exome Variant ServerOR4C3
ExAC (Exome Aggregation Consortium)ENSG00000176547
GNOMAD BrowserENSG00000176547
Genetic variants : HAPMAP256144
Genomic Variants (DGV)OR4C3 [DGVbeta]
DECIPHEROR4C3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4C3 
Mutations
ICGC Data PortalOR4C3 
TCGA Data PortalOR4C3 
Broad Tumor PortalOR4C3
OASIS PortalOR4C3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4C3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4C3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4C3
DgiDB (Drug Gene Interaction Database)OR4C3
DoCM (Curated mutations)OR4C3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4C3 (select a term)
intoGenOR4C3
Cancer3DOR4C3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR4C3
MedgenOR4C3
Genetic Testing Registry OR4C3
NextProtQ8NH37 [Medical]
TSGene256144
GENETestsOR4C3
Target ValidationOR4C3
Huge Navigator OR4C3 [HugePedia]
snp3D : Map Gene to Disease256144
BioCentury BCIQOR4C3
ClinGenOR4C3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256144
Chemical/Pharm GKB GenePA32261
Clinical trialOR4C3
Miscellaneous
canSAR (ICR)OR4C3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4C3
EVEXOR4C3
GoPubMedOR4C3
iHOPOR4C3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:24:26 CET 2017

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