Atlas of Genetics and Cytogenetics in Oncology and Haematology

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OR4C5 (olfactory receptor family 4 subfamily C member 5 (gene/pseudogene))

Identity

Alias_namesOR4C5P
olfactory receptor, family 4, subfamily C, member 5 pseudogene
olfactory receptor, family 4, subfamily C, member 5
olfactory receptor, family 4, subfamily C, member 5 (gene/pseudogene)
Alias_symbol (synonym)OR4C5Q
Other alias
HGNC (Hugo) OR4C5
LocusID (NCBI) 79346
Atlas_Id 80189
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 48365297 and ends at 48366488 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OR4C5   14702
Cards
Entrez_Gene (NCBI)OR4C5  79346  olfactory receptor family 4 subfamily C member 5 (gene/pseudogene)
AliasesOR4C5P; OR4C5Q
GeneCards (Weizmann)OR4C5
Ensembl hg19 (Hinxton)ENSG00000176540 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176540 [Gene_View]  ENSG00000176540 [Sequence]  chr11:48365297-48366488 [Contig_View]  OR4C5 [Vega]
ICGC DataPortalENSG00000176540
TCGA cBioPortalOR4C5
AceView (NCBI)OR4C5
Genatlas (Paris)OR4C5
WikiGenes79346
SOURCE (Princeton)OR4C5
Genetics Home Reference (NIH)OR4C5
Genomic and cartography
GoldenPath hg38 (UCSC)OR4C5  -     chr11:48365297-48366488 -  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4C5  -     11p11.2   [Description]    (hg19-Feb_2009)
GoldenPathOR4C5 - 11p11.2 [CytoView hg19]  OR4C5 - 11p11.2 [CytoView hg38]
ImmunoBaseENSG00000176540
Mapping of homologs : NCBIOR4C5 [Mapview hg19]  OR4C5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001348223
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4C5
Alternative Splicing GalleryENSG00000176540
Gene ExpressionOR4C5 [ NCBI-GEO ]   OR4C5 [ EBI - ARRAY_EXPRESS ]   OR4C5 [ SEEK ]   OR4C5 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4C5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79346
GTEX Portal (Tissue expression)OR4C5
Human Protein AtlasENSG00000176540-OR4C5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGB2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGB2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGB2
Splice isoforms : SwissVarQ8NGB2
PhosPhoSitePlusQ8NGB2
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR4C5
DMDM Disease mutations79346
Blocks (Seattle)OR4C5
SuperfamilyQ8NGB2
Human Protein Atlas [tissue]ENSG00000176540-OR4C5 [tissue]
Peptide AtlasQ8NGB2
IPIIPI00303337   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGB2
IntAct (EBI)Q8NGB2
FunCoupENSG00000176540
BioGRIDOR4C5
STRING (EMBL)OR4C5
ZODIACOR4C5
Ontologies - Pathways
QuickGOQ8NGB2
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR4C5
Atlas of Cancer Signalling NetworkOR4C5
Wikipedia pathwaysOR4C5
Orthology - Evolution
OrthoDB79346
GeneTree (enSembl)ENSG00000176540
Phylogenetic Trees/Animal Genes : TreeFamOR4C5
HOGENOMQ8NGB2
Homologs : HomoloGeneOR4C5
Homology/Alignments : Family Browser (UCSC)OR4C5
Gene fusions - Rearrangements
Fusion : QuiverOR4C5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4C5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4C5
dbVarOR4C5
ClinVarOR4C5
1000_GenomesOR4C5 
Exome Variant ServerOR4C5
ExAC (Exome Aggregation Consortium)ENSG00000176540
GNOMAD BrowserENSG00000176540
Varsome BrowserOR4C5
Genetic variants : HAPMAP79346
Genomic Variants (DGV)OR4C5 [DGVbeta]
DECIPHEROR4C5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4C5 
Mutations
ICGC Data PortalOR4C5 
TCGA Data PortalOR4C5 
Broad Tumor PortalOR4C5
OASIS PortalOR4C5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOR4C5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4C5
DgiDB (Drug Gene Interaction Database)OR4C5
DoCM (Curated mutations)OR4C5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4C5 (select a term)
intoGenOR4C5
Cancer3DOR4C5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR4C5
MedgenOR4C5
Genetic Testing Registry OR4C5
NextProtQ8NGB2 [Medical]
TSGene79346
GENETestsOR4C5
Target ValidationOR4C5
Huge Navigator OR4C5 [HugePedia]
snp3D : Map Gene to Disease79346
BioCentury BCIQOR4C5
ClinGenOR4C5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79346
Chemical/Pharm GKB GenePA32263
Clinical trialOR4C5
Miscellaneous
canSAR (ICR)OR4C5 (select the gene name)
DataMed IndexOR4C5
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4C5
EVEXOR4C5
GoPubMedOR4C5
iHOPOR4C5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 12 16:43:11 CEST 2019
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