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OR4C6 (olfactory receptor family 4 subfamily C member 6)

Identity

Alias_namesolfactory receptor, family 4, subfamily C, member 6
Other aliasOR11-138
HGNC (Hugo) OR4C6
LocusID (NCBI) 219432
Atlas_Id 71315
Location 11q11  [Link to chromosome band 11q11]
Location_base_pair Starts at 55665167 and ends at 55666096 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4C6   14743
Cards
Entrez_Gene (NCBI)OR4C6  219432  olfactory receptor family 4 subfamily C member 6
AliasesOR11-138
GeneCards (Weizmann)OR4C6
Ensembl hg19 (Hinxton)ENSG00000181903 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181903 [Gene_View]  chr11:55665167-55666096 [Contig_View]  OR4C6 [Vega]
ICGC DataPortalENSG00000181903
TCGA cBioPortalOR4C6
AceView (NCBI)OR4C6
Genatlas (Paris)OR4C6
WikiGenes219432
SOURCE (Princeton)OR4C6
Genetics Home Reference (NIH)OR4C6
Genomic and cartography
GoldenPath hg38 (UCSC)OR4C6  -     chr11:55665167-55666096 +  11q11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4C6  -     11q11   [Description]    (hg19-Feb_2009)
EnsemblOR4C6 - 11q11 [CytoView hg19]  OR4C6 - 11q11 [CytoView hg38]
Mapping of homologs : NCBIOR4C6 [Mapview hg19]  OR4C6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137216 BC137218
RefSeq transcript (Entrez)NM_001004704
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4C6
Cluster EST : UnigeneHs.511921 [ NCBI ]
CGAP (NCI)Hs.511921
Alternative Splicing GalleryENSG00000181903
Gene ExpressionOR4C6 [ NCBI-GEO ]   OR4C6 [ EBI - ARRAY_EXPRESS ]   OR4C6 [ SEEK ]   OR4C6 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4C6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219432
GTEX Portal (Tissue expression)OR4C6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH72
Splice isoforms : SwissVarQ8NH72
PhosPhoSitePlusQ8NH72
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4C6
DMDM Disease mutations219432
Blocks (Seattle)OR4C6
SuperfamilyQ8NH72
Human Protein AtlasENSG00000181903
Peptide AtlasQ8NH72
HPRD17724
IPIIPI00303707   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH72
IntAct (EBI)Q8NH72
FunCoupENSG00000181903
BioGRIDOR4C6
STRING (EMBL)OR4C6
ZODIACOR4C6
Ontologies - Pathways
QuickGOQ8NH72
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4C6
Atlas of Cancer Signalling NetworkOR4C6
Wikipedia pathwaysOR4C6
Orthology - Evolution
OrthoDB219432
GeneTree (enSembl)ENSG00000181903
Phylogenetic Trees/Animal Genes : TreeFamOR4C6
HOVERGENQ8NH72
HOGENOMQ8NH72
Homologs : HomoloGeneOR4C6
Homology/Alignments : Family Browser (UCSC)OR4C6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4C6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4C6
dbVarOR4C6
ClinVarOR4C6
1000_GenomesOR4C6 
Exome Variant ServerOR4C6
ExAC (Exome Aggregation Consortium)OR4C6 (select the gene name)
Genetic variants : HAPMAP219432
Genomic Variants (DGV)OR4C6 [DGVbeta]
DECIPHEROR4C6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4C6 
Mutations
ICGC Data PortalOR4C6 
TCGA Data PortalOR4C6 
Broad Tumor PortalOR4C6
OASIS PortalOR4C6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4C6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4C6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4C6
DgiDB (Drug Gene Interaction Database)OR4C6
DoCM (Curated mutations)OR4C6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4C6 (select a term)
intoGenOR4C6
Cancer3DOR4C6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4C6
Genetic Testing Registry OR4C6
NextProtQ8NH72 [Medical]
TSGene219432
GENETestsOR4C6
Target ValidationOR4C6
Huge Navigator OR4C6 [HugePedia]
snp3D : Map Gene to Disease219432
BioCentury BCIQOR4C6
ClinGenOR4C6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219432
Chemical/Pharm GKB GenePA32264
Clinical trialOR4C6
Miscellaneous
canSAR (ICR)OR4C6 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4C6
EVEXOR4C6
GoPubMedOR4C6
iHOPOR4C6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:34:39 CEST 2017

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